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B8CBX3 (B8CBX3_THAPS) Unreviewed, UniProtKB/TrEMBL

Last modified November 13, 2013. Version 31. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
EC=1.2.4.2 EMBL EED89203.1
Gene names
ORF Names:THAPSDRAFT_269718 EMBL EED89203.1
OrganismThalassiosira pseudonana (Marine diatom) (Cyclotella nana) [Reference proteome]
Taxonomic identifier35128 [NCBI]
Taxonomic lineageEukaryotaStramenopilesBacillariophytaCoscinodiscophyceaeThalassiosirophycidaeThalassiosiralesThalassiosiraceaeThalassiosira

Protein attributes

Sequence length1015 AA.
Sequence statusComplete.
Protein existencePredicted

Sequences

Sequence LengthMass (Da)Tools
B8CBX3 [UniParc].

Last modified March 3, 2009. Version 1.
Checksum: 3A7C94E0152488DB

FASTA1,015114,945
        10         20         30         40         50         60 
MRLSHGSGRH SSSNYISHHG NNSSIIRHLS THPSKNDSFL SASSSLYIES MLERYEQDPD 

        70         80         90        100        110        120 
SVPESWRTYF EMGAADASTS SSGEEAMFNQ PTIVLSTHLI RAYQVNGHRS ANLDPLGLHT 

       130        140        150        160        170        180 
NESFPSHDGF AATLNVGFHG FDPNKDMDRE LNFKGVHTGG NKGFLEDLTS MPGKVTLRKV 

       190        200        210        220        230        240 
LDRLRQTYCG TIGVEYMHIG STEQCNWIRE RVEHPSFLQC DREKKIHIYE RLCFADTFEN 

       250        260        270        280        290        300 
YMAHKFNTTK RFGLDGGEAI VPALKDAIDR ASELGAHSFI IGMPHRGRLN VLANVMRKPM 

       310        320        330        340        350        360 
TTIFSEFQGT HYEMGYYTKM KEDWGSSGDV KYHLGSSMDR TYPDGRKIHL SLVANPSHLE 

       370        380        390        400        410        420 
CVNPVVLGKA RAKQFYCGDS DEDMRNVVPI LLHGDAAFAG QGVVYETMQM MGVDDFKVGG 

       430        440        450        460        470        480 
TLHVIVNNQI GFTTNPINSR STPYASDLGK AFNCPIFHCN GDDPVAVSRA LETAVEWRHE 

       490        500        510        520        530        540 
WGTDVVIDMI CYRRNGHNEL DQPMFTQPKL YKAITRHPST LEIFEKKLIE EGTMSKEEVE 

       550        560        570        580        590        600 
EIRAFTLQSY ETDYEASKTY KPKPEDWLSS KWSGFKSPRQ HSRIRPTGVD IDTLRYIGNK 

       610        620        630        640        650        660 
AGEVPEGFKI HRQMNKIFKA RQTMAQEGTE IDWGLAEAMA FGSLLLEGNH VRLTGQDVQR 

       670        680        690        700        710        720 
GTFSHRHAVV KDQDTEEEYT PLNSLARILS MSAPLEELRL PDTQAKLTVR NSILSEFAVL 

       730        740        750        760        770        780 
GFEHGYSLEN PNALVLWEAQ FGDFVNGAQV MLDQFIAAGE DKWLRQSGLV MLLPHGYDGQ 

       790        800        810        820        830        840 
GAEHSSCRVE RYLQMVEEDP HHIPPMGKDE RNQIQKVNWQ IVNCTTPANY FHCLRRQIHR 

       850        860        870        880        890        900 
DFRKPLIVVA PKNLLRNKRC VSSLDDMGPG TIFHRTFDET DEVIKNNPEN VKTLVFCTGQ 

       910        920        930        940        950        960 
IYYELVGERE KLGRHDVAIV RLEQIAPFAF DKVALYCSKY GNAEVIWAQQ EPKNMGAYSY 

       970        980        990       1000       1010 
VLPRLMTATR EINNNEKRAR YVGRLVSSAP ATGMSKIHLK EYRDIMEGVF GEASE 

« Hide

References

[1]"The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism."
Armbrust E.V., Berges J.A., Bowler C., Green B.R., Martinez D., Putnam N.H., Zhou S., Allen A.E., Apt K.E., Bechner M., Brzezinski M.A., Chaal B.K., Chiovitti A., Davis A.K., Demarest M.S., Detter J.C., Glavina T., Goodstein D. expand/collapse author list , Hadi M.Z., Hellsten U., Hildebrand M., Jenkins B.D., Jurka J., Kapitonov V.V., Kroger N., Lau W.W., Lane T.W., Larimer F.W., Lippmeier J.C., Lucas S., Medina M., Montsant A., Obornik M., Parker M.S., Palenik B., Pazour G.J., Richardson P.M., Rynearson T.A., Saito M.A., Schwartz D.C., Thamatrakoln K., Valentin K., Vardi A., Wilkerson F.P., Rokhsar D.S.
Science 306:79-86(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: CCMP1335 EMBL EED89203.1.
[2]"The Phaeodactylum genome reveals the evolutionary history of diatom genomes."
Bowler C., Allen A.E., Badger J.H., Grimwood J., Jabbari K., Kuo A., Maheswari U., Martens C., Maumus F., Otillar R.P., Rayko E., Salamov A., Vandepoele K., Beszteri B., Gruber A., Heijde M., Katinka M., Mock T. expand/collapse author list , Valentin K., Verret F., Berges J.A., Brownlee C., Cadoret J.P., Chiovitti A., Choi C.J., Coesel S., De Martino A., Detter J.C., Durkin C., Falciatore A., Fournet J., Haruta M., Huysman M.J., Jenkins B.D., Jiroutova K., Jorgensen R.E., Joubert Y., Kaplan A., Kroger N., Kroth P.G., La Roche J., Lindquist E., Lommer M., Martin-Jezequel V., Lopez P.J., Lucas S., Mangogna M., McGinnis K., Medlin L.K., Montsant A., Oudot-Le Secq M.P., Napoli C., Obornik M., Parker M.S., Petit J.L., Porcel B.M., Poulsen N., Robison M., Rychlewski L., Rynearson T.A., Schmutz J., Shapiro H., Siaut M., Stanley M., Sussman M.R., Taylor A.R., Vardi A., von Dassow P., Vyverman W., Willis A., Wyrwicz L.S., Rokhsar D.S., Weissenbach J., Armbrust E.V., Green B.R., Van de Peer Y., Grigoriev I.V.
Nature 456:239-244(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: CCMP1335 EMBL EED89203.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CM000648 Genomic DNA. Translation: EED89203.1.
RefSeqXP_002293467.1. XM_002293431.1.

3D structure databases

ProteinModelPortalB8CBX3.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING35128.JGI269718.

Proteomic databases

PRIDEB8CBX3.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblProtistsThaps269718; Thaps269718; Thaps269718.
GeneID7450803.
KEGGtps:THAPSDRAFT_269718.

Phylogenomic databases

eggNOGCOG0567.
HOGENOMHOG000259586.
KOK00164.
ProtClustDBCLSN2686636.

Family and domain databases

InterProIPR011603. 2oxoglutarate_DH_E1.
IPR001017. DH_E1.
IPR005475. Transketolase-like_Pyr-bd.
[Graphical view]
PANTHERPTHR23152. PTHR23152. 1 hit.
PfamPF00676. E1_dh. 1 hit.
PF02779. Transket_pyr. 1 hit.
[Graphical view]
PIRSFPIRSF000157. Oxoglu_dh_E1. 1 hit.
SMARTSM00861. Transket_pyr. 1 hit.
[Graphical view]
TIGRFAMsTIGR00239. 2oxo_dh_E1. 1 hit.
ProtoNetSearch...

Entry information

Entry nameB8CBX3_THAPS
AccessionPrimary (citable) accession number: B8CBX3
Entry history
Integrated into UniProtKB/TrEMBL: March 3, 2009
Last sequence update: March 3, 2009
Last modified: November 13, 2013
This is version 31 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)