B8CBX3 (B8CBX3_THAPS) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
2-oxoglutarate dehydrogenase E1 component EMBL EED89203.1
EC=1.2.4.2 EMBL EED89203.1

Gene names

ORF Names:

THAPSDRAFT_269718 EMBL EED89203.1

Organism

Thalassiosira pseudonana (Marine diatom) (Cyclotella nana) [Reference proteome]

Taxonomic identifier

35128 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Stramenopiles › Bacillariophyta › Coscinodiscophyceae › Thalassiosirophycidae › Thalassiosirales › Thalassiosiraceae › Thalassiosira

Protein attributes

Sequence length	1015 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Oxidoreductase EMBL EED89203.1
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	tricarboxylic acid cycle Inferred from electronic annotation. Source: InterPro
Molecular_function	oxoglutarate dehydrogenase (succinyl-transferring) activity Inferred from electronic annotation. Source: EC thiamine pyrophosphate binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B8CBX3 [UniParc]. Last modified March 3, 2009. Version 1. Checksum: 3A7C94E0152488DB	FASTA	1,015	114,945
	10 20 30 40 50 60 MRLSHGSGRH SSSNYISHHG NNSSIIRHLS THPSKNDSFL SASSSLYIES MLERYEQDPD 70 80 90 100 110 120 SVPESWRTYF EMGAADASTS SSGEEAMFNQ PTIVLSTHLI RAYQVNGHRS ANLDPLGLHT 130 140 150 160 170 180 NESFPSHDGF AATLNVGFHG FDPNKDMDRE LNFKGVHTGG NKGFLEDLTS MPGKVTLRKV 190 200 210 220 230 240 LDRLRQTYCG TIGVEYMHIG STEQCNWIRE RVEHPSFLQC DREKKIHIYE RLCFADTFEN 250 260 270 280 290 300 YMAHKFNTTK RFGLDGGEAI VPALKDAIDR ASELGAHSFI IGMPHRGRLN VLANVMRKPM 310 320 330 340 350 360 TTIFSEFQGT HYEMGYYTKM KEDWGSSGDV KYHLGSSMDR TYPDGRKIHL SLVANPSHLE 370 380 390 400 410 420 CVNPVVLGKA RAKQFYCGDS DEDMRNVVPI LLHGDAAFAG QGVVYETMQM MGVDDFKVGG 430 440 450 460 470 480 TLHVIVNNQI GFTTNPINSR STPYASDLGK AFNCPIFHCN GDDPVAVSRA LETAVEWRHE 490 500 510 520 530 540 WGTDVVIDMI CYRRNGHNEL DQPMFTQPKL YKAITRHPST LEIFEKKLIE EGTMSKEEVE 550 560 570 580 590 600 EIRAFTLQSY ETDYEASKTY KPKPEDWLSS KWSGFKSPRQ HSRIRPTGVD IDTLRYIGNK 610 620 630 640 650 660 AGEVPEGFKI HRQMNKIFKA RQTMAQEGTE IDWGLAEAMA FGSLLLEGNH VRLTGQDVQR 670 680 690 700 710 720 GTFSHRHAVV KDQDTEEEYT PLNSLARILS MSAPLEELRL PDTQAKLTVR NSILSEFAVL 730 740 750 760 770 780 GFEHGYSLEN PNALVLWEAQ FGDFVNGAQV MLDQFIAAGE DKWLRQSGLV MLLPHGYDGQ 790 800 810 820 830 840 GAEHSSCRVE RYLQMVEEDP HHIPPMGKDE RNQIQKVNWQ IVNCTTPANY FHCLRRQIHR 850 860 870 880 890 900 DFRKPLIVVA PKNLLRNKRC VSSLDDMGPG TIFHRTFDET DEVIKNNPEN VKTLVFCTGQ 910 920 930 940 950 960 IYYELVGERE KLGRHDVAIV RLEQIAPFAF DKVALYCSKY GNAEVIWAQQ EPKNMGAYSY 970 980 990 1000 1010 VLPRLMTATR EINNNEKRAR YVGRLVSSAP ATGMSKIHLK EYRDIMEGVF GEASE

References

[1]

"The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism." Armbrust E.V., Berges J.A., Bowler C., Green B.R., Martinez D., Putnam N.H., Zhou S., Allen A.E., Apt K.E., Bechner M., Brzezinski M.A., Chaal B.K., Chiovitti A., Davis A.K., Demarest M.S., Detter J.C., Glavina T., Goodstein D. , Hadi M.Z., Hellsten U., Hildebrand M., Jenkins B.D., Jurka J., Kapitonov V.V., Kroger N., Lau W.W., Lane T.W., Larimer F.W., Lippmeier J.C., Lucas S., Medina M., Montsant A., Obornik M., Parker M.S., Palenik B., Pazour G.J., Richardson P.M., Rynearson T.A., Saito M.A., Schwartz D.C., Thamatrakoln K., Valentin K., Vardi A., Wilkerson F.P., Rokhsar D.S. Science 306:79-86(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: CCMP1335 EMBL EED89203.1.

[2]

"The Phaeodactylum genome reveals the evolutionary history of diatom genomes." Bowler C., Allen A.E., Badger J.H., Grimwood J., Jabbari K., Kuo A., Maheswari U., Martens C., Maumus F., Otillar R.P., Rayko E., Salamov A., Vandepoele K., Beszteri B., Gruber A., Heijde M., Katinka M., Mock T. , Valentin K., Verret F., Berges J.A., Brownlee C., Cadoret J.P., Chiovitti A., Choi C.J., Coesel S., De Martino A., Detter J.C., Durkin C., Falciatore A., Fournet J., Haruta M., Huysman M.J., Jenkins B.D., Jiroutova K., Jorgensen R.E., Joubert Y., Kaplan A., Kroger N., Kroth P.G., La Roche J., Lindquist E., Lommer M., Martin-Jezequel V., Lopez P.J., Lucas S., Mangogna M., McGinnis K., Medlin L.K., Montsant A., Oudot-Le Secq M.P., Napoli C., Obornik M., Parker M.S., Petit J.L., Porcel B.M., Poulsen N., Robison M., Rychlewski L., Rynearson T.A., Schmutz J., Shapiro H., Siaut M., Stanley M., Sussman M.R., Taylor A.R., Vardi A., von Dassow P., Vyverman W., Willis A., Wyrwicz L.S., Rokhsar D.S., Weissenbach J., Armbrust E.V., Green B.R., Van de Peer Y., Grigoriev I.V. Nature 456:239-244(2008) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: CCMP1335 EMBL EED89203.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CM000648 Genomic DNA. Translation: EED89203.1.
RefSeq	XP_002293467.1. XM_002293431.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	35128.JGI269718. B8CBX3.
Proteomic databases
PRIDE	B8CBX3.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblProtists	Thaps269718; Thaps269718; Thaps269718.
GeneID	7450803.
KEGG	tps:THAPSDRAFT_269718.
Phylogenomic databases
eggNOG	COG0567.
HOGENOM	HOG000259586.
KO	K00164.
ProtClustDB	CLSN2686636.
Family and domain databases
InterPro	IPR011603. 2oxoglutarate_DH_E1. IPR001017. DH_E1. IPR005475. Transketolase-like_Pyr-bd. [Graphical view]
PANTHER	PTHR23152. PTHR23152. 1 hit.
Pfam	PF00676. E1_dh. 1 hit. PF02779. Transket_pyr. 1 hit. [Graphical view]
PIRSF	PIRSF000157. Oxoglu_dh_E1. 1 hit.
SMART	SM00861. Transket_pyr. 1 hit. [Graphical view]
TIGRFAMs	TIGR00239. 2oxo_dh_E1. 1 hit.
ProtoNet	Search...

Entry information

Entry name

B8CBX3_THAPS

Accession

Primary (citable) accession number: B8CBX3

Entry history

Integrated into UniProtKB/TrEMBL:	March 3, 2009
Last sequence update:	March 3, 2009
Last modified:	April 3, 2013
This is version 27 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)