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B8C2F6

- B8C2F6_THAPS

UniProt

B8C2F6 - B8C2F6_THAPS

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Protein
Submitted name: Set-domain-containing protein
Gene
THAPSDRAFT_268872
Organism
Thalassiosira pseudonana (Marine diatom) (Cyclotella nana)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Names & Taxonomyi

Protein namesi
Submitted name:
Set-domain-containing proteinImported
Gene namesi
ORF Names:THAPSDRAFT_268872Imported
OrganismiThalassiosira pseudonana (Marine diatom) (Cyclotella nana)
Taxonomic identifieri35128 [NCBI]
Taxonomic lineageiEukaryotaStramenopilesBacillariophytaCoscinodiscophyceaeThalassiosirophycidaeThalassiosiralesThalassiosiraceaeThalassiosira
ProteomesiUP000001449: Unassembled WGS sequence

Interactioni

Protein-protein interaction databases

STRINGi35128.JGI268872.

Family & Domainsi

Sequence similaritiesi

Contains 1 SET domain.UniRule annotation
Contains SET domain.SAAS annotations

Phylogenomic databases

eggNOGiCOG2940.
HOGENOMiHOG000212420.
KOiK11430.

Family and domain databases

InterProiIPR026489. CXC_dom.
IPR001214. SET_dom.
[Graphical view]
PfamiPF00856. SET. 1 hit.
[Graphical view]
SMARTiSM00317. SET. 1 hit.
[Graphical view]
PROSITEiPS51633. CXC. 1 hit.
PS50280. SET. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B8C2F6-1 [UniParc]FASTAAdd to Basket

« Hide

MFQGNIEKIA VTIGASIESV KAFVKTNKVE LSPPKHDVVA SNKRKDKTTE    50
YTSMKNYNQN WLKSIQSKEI HPSFIPCDHS EPCNEETCSC IQNAFFCTKH 100
CGWGSKSRNF FRGCACKAGQ CRTSSCACYA AKRECDPDLC RTCGTCEDPP 150
DKPAEKQRCR NDNLSMRRHI HCLLGESTIA NAGWGLFTKH SLKKGDFIHE 200
YVGEVISQEE AERRGIIYDK LNMSYLFNLS SDFVVDATRK GNKARYANHS 250
STPNCEPRMI RVNGDMRIGL FAREDIDAQS ELFFDYRYDD EMDNDLIVKS 300
AHKPVWIKRG KASSKSTNIA L 321
Length:321
Mass (Da):36,374
Last modified:March 3, 2009 - v1
Checksum:i5AF4DE3766471704
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CM000642 Genomic DNA. Translation: EED91943.1.
RefSeqiXP_002290191.1. XM_002290155.1.

Genome annotation databases

EnsemblProtistsiThaps268872; Thaps268872; Thaps268872.
GeneIDi7449580.
KEGGitps:THAPSDRAFT_268872.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CM000642 Genomic DNA. Translation: EED91943.1 .
RefSeqi XP_002290191.1. XM_002290155.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 35128.JGI268872.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblProtistsi Thaps268872 ; Thaps268872 ; Thaps268872 .
GeneIDi 7449580.
KEGGi tps:THAPSDRAFT_268872.

Phylogenomic databases

eggNOGi COG2940.
HOGENOMi HOG000212420.
KOi K11430.

Family and domain databases

InterProi IPR026489. CXC_dom.
IPR001214. SET_dom.
[Graphical view ]
Pfami PF00856. SET. 1 hit.
[Graphical view ]
SMARTi SM00317. SET. 1 hit.
[Graphical view ]
PROSITEi PS51633. CXC. 1 hit.
PS50280. SET. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: CCMP1335Imported.
  2. Cited for: GENOME REANNOTATION.
    Strain: CCMP1335Imported.

Entry informationi

Entry nameiB8C2F6_THAPS
AccessioniPrimary (citable) accession number: B8C2F6
Entry historyi
Integrated into UniProtKB/TrEMBL: March 3, 2009
Last sequence update: March 3, 2009
Last modified: September 3, 2014
This is version 25 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3