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B8C2F6

- B8C2F6_THAPS

UniProt

B8C2F6 - B8C2F6_THAPS

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Protein
Submitted name:

Set-domain-containing protein

Gene

THAPSDRAFT_268872

Organism
Thalassiosira pseudonana (Marine diatom) (Cyclotella nana)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Names & Taxonomyi

Protein namesi
Submitted name:
Set-domain-containing proteinImported
Gene namesi
ORF Names:THAPSDRAFT_268872Imported
OrganismiThalassiosira pseudonana (Marine diatom) (Cyclotella nana)Imported
Taxonomic identifieri35128 [NCBI]
Taxonomic lineageiEukaryotaStramenopilesBacillariophytaCoscinodiscophyceaeThalassiosirophycidaeThalassiosiralesThalassiosiraceaeThalassiosira
ProteomesiUP000001449: Unassembled WGS sequence

Interactioni

Protein-protein interaction databases

STRINGi35128.JGI268872.

Family & Domainsi

Sequence similaritiesi

Contains 1 SET domain.UniRule annotation
Contains SET domain.SAAS annotation

Phylogenomic databases

eggNOGiCOG2940.
HOGENOMiHOG000212420.
InParanoidiB8C2F6.
KOiK11430.

Family and domain databases

InterProiIPR026489. CXC_dom.
IPR001214. SET_dom.
[Graphical view]
PfamiPF00856. SET. 1 hit.
[Graphical view]
SMARTiSM00317. SET. 1 hit.
[Graphical view]
PROSITEiPS51633. CXC. 1 hit.
PS50280. SET. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B8C2F6-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MFQGNIEKIA VTIGASIESV KAFVKTNKVE LSPPKHDVVA SNKRKDKTTE
60 70 80 90 100
YTSMKNYNQN WLKSIQSKEI HPSFIPCDHS EPCNEETCSC IQNAFFCTKH
110 120 130 140 150
CGWGSKSRNF FRGCACKAGQ CRTSSCACYA AKRECDPDLC RTCGTCEDPP
160 170 180 190 200
DKPAEKQRCR NDNLSMRRHI HCLLGESTIA NAGWGLFTKH SLKKGDFIHE
210 220 230 240 250
YVGEVISQEE AERRGIIYDK LNMSYLFNLS SDFVVDATRK GNKARYANHS
260 270 280 290 300
STPNCEPRMI RVNGDMRIGL FAREDIDAQS ELFFDYRYDD EMDNDLIVKS
310 320
AHKPVWIKRG KASSKSTNIA L
Length:321
Mass (Da):36,374
Last modified:March 3, 2009 - v1
Checksum:i5AF4DE3766471704
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CM000642 Genomic DNA. Translation: EED91943.1.
RefSeqiXP_002290191.1. XM_002290155.1.

Genome annotation databases

EnsemblProtistsiThaps268872; Thaps268872; Thaps268872.
GeneIDi7449580.
KEGGitps:THAPSDRAFT_268872.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CM000642 Genomic DNA. Translation: EED91943.1 .
RefSeqi XP_002290191.1. XM_002290155.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 35128.JGI268872.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblProtistsi Thaps268872 ; Thaps268872 ; Thaps268872 .
GeneIDi 7449580.
KEGGi tps:THAPSDRAFT_268872.

Phylogenomic databases

eggNOGi COG2940.
HOGENOMi HOG000212420.
InParanoidi B8C2F6.
KOi K11430.

Family and domain databases

InterProi IPR026489. CXC_dom.
IPR001214. SET_dom.
[Graphical view ]
Pfami PF00856. SET. 1 hit.
[Graphical view ]
SMARTi SM00317. SET. 1 hit.
[Graphical view ]
PROSITEi PS51633. CXC. 1 hit.
PS50280. SET. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: CCMP1335Imported.
  2. Cited for: GENOME REANNOTATION.
    Strain: CCMP1335Imported.

Entry informationi

Entry nameiB8C2F6_THAPS
AccessioniPrimary (citable) accession number: B8C2F6
Entry historyi
Integrated into UniProtKB/TrEMBL: March 3, 2009
Last sequence update: March 3, 2009
Last modified: October 29, 2014
This is version 27 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3