Skip Header

Contribute Send feedback
Read comments (?) or add your own

B8C2F6 (B8C2F6_THAPS) Unreviewed, UniProtKB/TrEMBL

Last modified April 3, 2013. Version 21. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesSubmitted name:
Set-domain-containing protein EMBL EED91943.1
Gene names
ORF Names:THAPSDRAFT_268872 EMBL EED91943.1
OrganismThalassiosira pseudonana (Marine diatom) (Cyclotella nana) [Reference proteome]
Taxonomic identifier35128 [NCBI]
Taxonomic lineageEukaryota › Stramenopiles › Bacillariophyta › Coscinodiscophyceae › Thalassiosirophycidae › Thalassiosirales › Thalassiosiraceae › Thalassiosira

Protein attributes

Sequence length321 AA.
Sequence statusComplete.
Protein existencePredicted

General annotation (Comments)

Sequence similarities

Contains 1 SET domain. SAAS SAAS001214 RuleBase RU004538

Ontologies

Keywords
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
None. [Check GOA]

Sequences

Sequence LengthMass (Da)Tools
B8C2F6 [UniParc].

Last modified March 3, 2009. Version 1.
Checksum: 5AF4DE3766471704

FASTA32136,374
        10         20         30         40         50         60 
MFQGNIEKIA VTIGASIESV KAFVKTNKVE LSPPKHDVVA SNKRKDKTTE YTSMKNYNQN 

        70         80         90        100        110        120 
WLKSIQSKEI HPSFIPCDHS EPCNEETCSC IQNAFFCTKH CGWGSKSRNF FRGCACKAGQ 

       130        140        150        160        170        180 
CRTSSCACYA AKRECDPDLC RTCGTCEDPP DKPAEKQRCR NDNLSMRRHI HCLLGESTIA 

       190        200        210        220        230        240 
NAGWGLFTKH SLKKGDFIHE YVGEVISQEE AERRGIIYDK LNMSYLFNLS SDFVVDATRK 

       250        260        270        280        290        300 
GNKARYANHS STPNCEPRMI RVNGDMRIGL FAREDIDAQS ELFFDYRYDD EMDNDLIVKS 

       310        320 
AHKPVWIKRG KASSKSTNIA L

« Hide

References

[1]"The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism."
Armbrust E.V., Berges J.A., Bowler C., Green B.R., Martinez D., Putnam N.H., Zhou S., Allen A.E., Apt K.E., Bechner M., Brzezinski M.A., Chaal B.K., Chiovitti A., Davis A.K., Demarest M.S., Detter J.C., Glavina T., Goodstein D. expand/collapse author list , Hadi M.Z., Hellsten U., Hildebrand M., Jenkins B.D., Jurka J., Kapitonov V.V., Kroger N., Lau W.W., Lane T.W., Larimer F.W., Lippmeier J.C., Lucas S., Medina M., Montsant A., Obornik M., Parker M.S., Palenik B., Pazour G.J., Richardson P.M., Rynearson T.A., Saito M.A., Schwartz D.C., Thamatrakoln K., Valentin K., Vardi A., Wilkerson F.P., Rokhsar D.S.
Science 306:79-86(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: CCMP1335 EMBL EED91943.1.
[2]"The Phaeodactylum genome reveals the evolutionary history of diatom genomes."
Bowler C., Allen A.E., Badger J.H., Grimwood J., Jabbari K., Kuo A., Maheswari U., Martens C., Maumus F., Otillar R.P., Rayko E., Salamov A., Vandepoele K., Beszteri B., Gruber A., Heijde M., Katinka M., Mock T. expand/collapse author list , Valentin K., Verret F., Berges J.A., Brownlee C., Cadoret J.P., Chiovitti A., Choi C.J., Coesel S., De Martino A., Detter J.C., Durkin C., Falciatore A., Fournet J., Haruta M., Huysman M.J., Jenkins B.D., Jiroutova K., Jorgensen R.E., Joubert Y., Kaplan A., Kroger N., Kroth P.G., La Roche J., Lindquist E., Lommer M., Martin-Jezequel V., Lopez P.J., Lucas S., Mangogna M., McGinnis K., Medlin L.K., Montsant A., Oudot-Le Secq M.P., Napoli C., Obornik M., Parker M.S., Petit J.L., Porcel B.M., Poulsen N., Robison M., Rychlewski L., Rynearson T.A., Schmutz J., Shapiro H., Siaut M., Stanley M., Sussman M.R., Taylor A.R., Vardi A., von Dassow P., Vyverman W., Willis A., Wyrwicz L.S., Rokhsar D.S., Weissenbach J., Armbrust E.V., Green B.R., Van de Peer Y., Grigoriev I.V.
Nature 456:239-244(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: CCMP1335 EMBL EED91943.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CM000642 Genomic DNA. Translation: EED91943.1.
RefSeqXP_002290191.1. XM_002290155.1.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblProtistsThaps268872; Thaps268872; Thaps268872.
GeneID7449580.
KEGGtps:THAPSDRAFT_268872.

Phylogenomic databases

eggNOGCOG2940.
HOGENOMHOG000212420.
KOK11430.

Family and domain databases

InterProIPR026489. CXC_dom.
IPR001214. SET_dom.
[Graphical view]
PfamPF00856. SET. 1 hit.
[Graphical view]
SMARTSM00317. SET. 1 hit.
[Graphical view]
PROSITEPS51633. CXC. 1 hit.
PS50280. SET. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB8C2F6_THAPS
AccessionPrimary (citable) accession number: B8C2F6
Entry history
Integrated into UniProtKB/TrEMBL: March 3, 2009
Last sequence update: March 3, 2009
Last modified: April 3, 2013
This is version 21 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry info