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B8C2F6

- B8C2F6_THAPS

UniProt

B8C2F6 - B8C2F6_THAPS

Protein
Submitted name:

Set-domain-containing protein

Gene

THAPSDRAFT_268872

Organism
Thalassiosira pseudonana (Marine diatom) (Cyclotella nana)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 26 (01 Oct 2014)
      Sequence version 1 (03 Mar 2009)
      Previous versions | rss
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    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Set-domain-containing proteinImported
    Gene namesi
    ORF Names:THAPSDRAFT_268872Imported
    OrganismiThalassiosira pseudonana (Marine diatom) (Cyclotella nana)Imported
    Taxonomic identifieri35128 [NCBI]
    Taxonomic lineageiEukaryotaStramenopilesBacillariophytaCoscinodiscophyceaeThalassiosirophycidaeThalassiosiralesThalassiosiraceaeThalassiosira
    ProteomesiUP000001449: Unassembled WGS sequence

    Interactioni

    Protein-protein interaction databases

    STRINGi35128.JGI268872.

    Family & Domainsi

    Sequence similaritiesi

    Contains 1 SET domain.UniRule annotation
    Contains SET domain.SAAS annotation

    Phylogenomic databases

    eggNOGiCOG2940.
    HOGENOMiHOG000212420.
    KOiK11430.

    Family and domain databases

    InterProiIPR026489. CXC_dom.
    IPR001214. SET_dom.
    [Graphical view]
    PfamiPF00856. SET. 1 hit.
    [Graphical view]
    SMARTiSM00317. SET. 1 hit.
    [Graphical view]
    PROSITEiPS51633. CXC. 1 hit.
    PS50280. SET. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    B8C2F6-1 [UniParc]FASTAAdd to Basket

    « Hide

    MFQGNIEKIA VTIGASIESV KAFVKTNKVE LSPPKHDVVA SNKRKDKTTE    50
    YTSMKNYNQN WLKSIQSKEI HPSFIPCDHS EPCNEETCSC IQNAFFCTKH 100
    CGWGSKSRNF FRGCACKAGQ CRTSSCACYA AKRECDPDLC RTCGTCEDPP 150
    DKPAEKQRCR NDNLSMRRHI HCLLGESTIA NAGWGLFTKH SLKKGDFIHE 200
    YVGEVISQEE AERRGIIYDK LNMSYLFNLS SDFVVDATRK GNKARYANHS 250
    STPNCEPRMI RVNGDMRIGL FAREDIDAQS ELFFDYRYDD EMDNDLIVKS 300
    AHKPVWIKRG KASSKSTNIA L 321
    Length:321
    Mass (Da):36,374
    Last modified:March 3, 2009 - v1
    Checksum:i5AF4DE3766471704
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CM000642 Genomic DNA. Translation: EED91943.1.
    RefSeqiXP_002290191.1. XM_002290155.1.

    Genome annotation databases

    EnsemblProtistsiThaps268872; Thaps268872; Thaps268872.
    GeneIDi7449580.
    KEGGitps:THAPSDRAFT_268872.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CM000642 Genomic DNA. Translation: EED91943.1 .
    RefSeqi XP_002290191.1. XM_002290155.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 35128.JGI268872.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblProtistsi Thaps268872 ; Thaps268872 ; Thaps268872 .
    GeneIDi 7449580.
    KEGGi tps:THAPSDRAFT_268872.

    Phylogenomic databases

    eggNOGi COG2940.
    HOGENOMi HOG000212420.
    KOi K11430.

    Family and domain databases

    InterProi IPR026489. CXC_dom.
    IPR001214. SET_dom.
    [Graphical view ]
    Pfami PF00856. SET. 1 hit.
    [Graphical view ]
    SMARTi SM00317. SET. 1 hit.
    [Graphical view ]
    PROSITEi PS51633. CXC. 1 hit.
    PS50280. SET. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: CCMP1335Imported.
    2. Cited for: GENOME REANNOTATION.
      Strain: CCMP1335Imported.

    Entry informationi

    Entry nameiB8C2F6_THAPS
    AccessioniPrimary (citable) accession number: B8C2F6
    Entry historyi
    Integrated into UniProtKB/TrEMBL: March 3, 2009
    Last sequence update: March 3, 2009
    Last modified: October 1, 2014
    This is version 26 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3