B8C0H8 (B8C0H8_THAPS) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Glycosylase EMBL EED93519.1

Gene names

Name:	Fpg EMBL EED93519.1
ORF Names:	THAPSDRAFT_262318 EMBL EED93519.1

Organism

Thalassiosira pseudonana (Marine diatom) (Cyclotella nana) [Reference proteome]

Taxonomic identifier

35128 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Stramenopiles › Bacillariophyta › Coscinodiscophyceae › Thalassiosirophycidae › Thalassiosirales › Thalassiosiraceae › Thalassiosira

Protein attributes

Sequence length	447 AA.
Sequence status	Fragment.
Protein existence	Predicted

Ontologies

Keywords
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	base-excision repair Inferred from electronic annotation. Source: InterPro nucleotide-excision repair Inferred from electronic annotation. Source: InterPro
Molecular_function	DNA-(apurinic or apyrimidinic site) lyase activity Inferred from electronic annotation. Source: InterPro damaged DNA binding Inferred from electronic annotation. Source: InterPro hydrolase activity, hydrolyzing N-glycosyl compounds Inferred from electronic annotation. Source: InterPro zinc ion binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Experimental info
	Non-terminal residue	447	1	EMBL EED93519.1

Sequences

	Sequence		Length	Mass (Da)
	B8C0H8 [UniParc]. Last modified March 3, 2009. Version 1. Checksum: 6CF519F914E357EE	FASTA	447	48,979
	10 20 30 40 50 60 MVEGPGCTRN GRKVQIAVGK AATAAVHVAD SNDASPSSST SPLPHHVAQE LSEQTLTEAF 70 80 90 100 110 120 TVGKELFLVF SDTNEKDNVL RLHFGMNGSL NARRAYTNKS NQKKASGAAP WKQNKTPCLR 130 140 150 160 170 180 LYFTEVNYKT VSADAARDKL FRLNSRDVCS ALFNAQDAFT SLRQAGQHMS ISDALLNQDI 190 200 210 220 230 240 FPGVGNIIKI ESLHRSLVDP RKIVNTLSDQ ELRRIVRHTR KFSMDWLNTG RAGTKLVYNQ 250 260 270 280 290 300 TVCGTCGGMT VKMQKIGGGG DRNTSGNGQA FMSRVTFWCT ACQPLSSSLA AGNASNKENF 310 320 330 340 350 360 VQHSTMGTTQ PFSNQQHSSN INNNSAPVAS QVQPLRCNAQ CPQHGTKSIK LCRTRNSNSQ 370 380 390 400 410 420 NTLRIFFTCK LKGCQYFSWA DATFPFCPCG KKTVLRVSKT ERSGGRWFLC CSLGVDKSSK 430 440 DKNGCGHFDW AKEEHLAPLG SHLSPLL

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism." Armbrust E.V., Berges J.A., Bowler C., Green B.R., Martinez D., Putnam N.H., Zhou S., Allen A.E., Apt K.E., Bechner M., Brzezinski M.A., Chaal B.K., Chiovitti A., Davis A.K., Demarest M.S., Detter J.C., Glavina T., Goodstein D. , Hadi M.Z., Hellsten U., Hildebrand M., Jenkins B.D., Jurka J., Kapitonov V.V., Kroger N., Lau W.W., Lane T.W., Larimer F.W., Lippmeier J.C., Lucas S., Medina M., Montsant A., Obornik M., Parker M.S., Palenik B., Pazour G.J., Richardson P.M., Rynearson T.A., Saito M.A., Schwartz D.C., Thamatrakoln K., Valentin K., Vardi A., Wilkerson F.P., Rokhsar D.S. Science 306:79-86(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: CCMP1335 EMBL EED93519.1.
[2]	Diatom Consortium Grigoriev I., Grimwood J., Kuo A., Otillar R.P., Salamov A., Detter J.C., Schmutz J., Lindquist E., Shapiro H., Lucas S., Glavina del Rio T., Bruce D., Pitluck S., Rokhsar D., Armbrust V. Submitted (SEP-2008) to the EMBL/GenBank/DDBJ databases Cited for: GENOME REANNOTATION. Strain: CCMP1335 EMBL EED93519.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CM000641 Genomic DNA. Translation: EED93519.1.
RefSeq	XP_002289982.1. XM_002289946.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblProtists	Thaps262318; Thaps262318; Thaps262318.
GeneID	7451378.
KEGG	tps:THAPSDRAFT_262318.
Phylogenomic databases
eggNOG	NOG237937.
KO	K10569.
Family and domain databases
InterPro	IPR015886. DNA_glyclase/AP_lyase_DNA-bd. IPR012319. DNA_glycosylase/AP_lyase_cat. IPR010979. Ribosomal_S13-like_H2TH. IPR010666. Znf_GRF. [Graphical view]
Pfam	PF01149. Fapy_DNA_glyco. 1 hit. PF06831. H2TH. 1 hit. PF06839. zf-GRF. 2 hits. [Graphical view]
SUPFAM	SSF81624. Form_DNAglyc_cat. 1 hit. SSF46946. Ribosomal_H2TH. 1 hit.
PROSITE	PS51068. FPG_CAT. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B8C0H8_THAPS

Accession

Primary (citable) accession number: B8C0H8

Entry history

Integrated into UniProtKB/TrEMBL:	March 3, 2009
Last sequence update:	March 3, 2009
Last modified:	January 9, 2013
This is version 20 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)