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B8BZZ2 (B8BZZ2_THAPS) Unreviewed, UniProtKB/TrEMBL

Last modified February 19, 2014. Version 31. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein names
Gene names
ORF Names:THAPSDRAFT_17735 EMBL EED93431.1
OrganismThalassiosira pseudonana (Marine diatom) (Cyclotella nana) [Reference proteome]
Taxonomic identifier35128 [NCBI]
Taxonomic lineageEukaryotaStramenopilesBacillariophytaCoscinodiscophyceaeThalassiosirophycidaeThalassiosiralesThalassiosiraceaeThalassiosira

Protein attributes

Sequence length221 AA.
Sequence statusFragment.
Protein existenceInferred from homology

Ontologies

Keywords
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processglycolysis

Inferred from electronic annotation. Source: InterPro

   Molecular_functionphosphoglycerate mutase activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Experimental info

Non-terminal residue11 EMBL EED93431.1
Non-terminal residue2211 EMBL EED93431.1

Sequences

Sequence LengthMass (Da)Tools
B8BZZ2 [UniParc].

Last modified March 3, 2009. Version 1.
Checksum: 48BE2C40F01F8D7F

FASTA22125,827
        10         20         30         40         50         60 
YNLCFVRHGQ STWNRDNRFI GWTDTPLTED GVLEARVAGR MLRSSGMLFD EAHTSLLRRS 

        70         80         90        100        110        120 
IRTTNLVLME MGQEYIPVQK HWRLNERSYG DLVGLNKKEI VKKFGKEQVL RWRRSYDEPP 

       130        140        150        160        170        180 
PPMNEDHDHH PKRDPRYRLM LDEIPSSESL KCTKARSKIY WDDVIAPSLR SGKTVLIVGH 

       190        200        210        220 
ENNLRSLIMR LEGILPDDII NLNLPRAVPL AYRLDKDLKP L 

« Hide

References

[1]"The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism."
Armbrust E.V., Berges J.A., Bowler C., Green B.R., Martinez D., Putnam N.H., Zhou S., Allen A.E., Apt K.E., Bechner M., Brzezinski M.A., Chaal B.K., Chiovitti A., Davis A.K., Demarest M.S., Detter J.C., Glavina T., Goodstein D. expand/collapse author list , Hadi M.Z., Hellsten U., Hildebrand M., Jenkins B.D., Jurka J., Kapitonov V.V., Kroger N., Lau W.W., Lane T.W., Larimer F.W., Lippmeier J.C., Lucas S., Medina M., Montsant A., Obornik M., Parker M.S., Palenik B., Pazour G.J., Richardson P.M., Rynearson T.A., Saito M.A., Schwartz D.C., Thamatrakoln K., Valentin K., Vardi A., Wilkerson F.P., Rokhsar D.S.
Science 306:79-86(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: CCMP1335 EMBL EED93431.1.
[2]"The Phaeodactylum genome reveals the evolutionary history of diatom genomes."
Bowler C., Allen A.E., Badger J.H., Grimwood J., Jabbari K., Kuo A., Maheswari U., Martens C., Maumus F., Otillar R.P., Rayko E., Salamov A., Vandepoele K., Beszteri B., Gruber A., Heijde M., Katinka M., Mock T. expand/collapse author list , Valentin K., Verret F., Berges J.A., Brownlee C., Cadoret J.P., Chiovitti A., Choi C.J., Coesel S., De Martino A., Detter J.C., Durkin C., Falciatore A., Fournet J., Haruta M., Huysman M.J., Jenkins B.D., Jiroutova K., Jorgensen R.E., Joubert Y., Kaplan A., Kroger N., Kroth P.G., La Roche J., Lindquist E., Lommer M., Martin-Jezequel V., Lopez P.J., Lucas S., Mangogna M., McGinnis K., Medlin L.K., Montsant A., Oudot-Le Secq M.P., Napoli C., Obornik M., Parker M.S., Petit J.L., Porcel B.M., Poulsen N., Robison M., Rychlewski L., Rynearson T.A., Schmutz J., Shapiro H., Siaut M., Stanley M., Sussman M.R., Taylor A.R., Vardi A., von Dassow P., Vyverman W., Willis A., Wyrwicz L.S., Rokhsar D.S., Weissenbach J., Armbrust E.V., Green B.R., Van de Peer Y., Grigoriev I.V.
Nature 456:239-244(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: CCMP1335 EMBL EED93431.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CM000641 Genomic DNA. Translation: EED93431.1.
RefSeqXP_002289894.1. XM_002289858.1.

3D structure databases

ProteinModelPortalB8BZZ2.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING35128.JGI17735.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblProtistsThaps17735; Thaps17735; Thaps17735.
GeneID7443718.
KEGGtps:THAPSDRAFT_17735.

Phylogenomic databases

eggNOGCOG0588.
HOGENOMHOG000221682.
KOK01834.

Family and domain databases

HAMAPMF_01039. PGAM_GpmA.
InterProIPR013078. His_Pase_superF_clade-1.
IPR005952. Phosphogly_mut1.
[Graphical view]
PANTHERPTHR11931. PTHR11931. 1 hit.
PfamPF00300. His_Phos_1. 1 hit.
[Graphical view]
SMARTSM00855. PGAM. 1 hit.
[Graphical view]
TIGRFAMsTIGR01258. pgm_1. 1 hit.
ProtoNetSearch...

Entry information

Entry nameB8BZZ2_THAPS
AccessionPrimary (citable) accession number: B8BZZ2
Entry history
Integrated into UniProtKB/TrEMBL: March 3, 2009
Last sequence update: March 3, 2009
Last modified: February 19, 2014
This is version 31 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)