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B8BVG4 (B8BVG4_THAPS) Unreviewed, UniProtKB/TrEMBL

Last modified November 13, 2013. Version 18. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
ORF Names:THAPSDRAFT_21476 EMBL EED94929.1
OrganismThalassiosira pseudonana (Marine diatom) (Cyclotella nana) [Reference proteome]
Taxonomic identifier35128 [NCBI]
Taxonomic lineageEukaryotaStramenopilesBacillariophytaCoscinodiscophyceaeThalassiosirophycidaeThalassiosiralesThalassiosiraceaeThalassiosira

Protein attributes

Sequence length739 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
None. [Check GOA]

Sequences

Sequence LengthMass (Da)Tools
B8BVG4 [UniParc].

Last modified March 3, 2009. Version 1.
Checksum: 3A7345C4F41194C4

FASTA73981,094
        10         20         30         40         50         60 
MSGTENEDTA AAITSHSAGM IGMIASALAS LSAEDDTVVQ ANCCLEDADI EAMGSHKDEE 

        70         80         90        100        110        120 
TTSAAVNKNK NGANTKATAQ EIITNKLLAG YTLNGEVCDK CMMPTMAMNG VASCVVCTSE 

       130        140        150        160        170        180 
FTARRSVATD VYATKILEGY VMNESLCDKC DMPMMEHDKA IACVFCKEEV VGEEAAVEET 

       190        200        210        220        230        240 
TVENEEYVDT AKSELGVDED EEAATDRKEL SRTEKLAASL QEINAQLNGK RESQLDQAEK 

       250        260        270        280        290        300 
EIREMIRHLE IYEKQSKDAN ASLQDFYSYK AAVSCAMSEL QRKIPDNIFA EVTRVEEGRN 

       310        320        330        340        350        360 
DAGFEDWERR VFEGLMLMND RRTEGWTIGD GKDGAYAPRD DTVEERDSQE KSAFIEIPKA 

       370        380        390        400        410        420 
VLVNDSIQYE ANVVDDVEHF NHEPRSGIAI EHFHSSVNSA PTLSCNAPNF GCNIGESILP 

       430        440        450        460        470        480 
SLRSLFAGAS GVNKEDKLKT QQEAKSEISH LLAQGWQVSA ENCEACDMPL FTIGYGMNEL 

       490        500        510        520        530        540 
KVCVLCGPVN DKSIGQHHHY EPTQNLGFEE RASNEMARLM MSGWTISSTI CEHCVIPKIS 

       550        560        570        580        590        600 
NPVTKQLHCV GCSIAPNQQS NQYGATHDIF DMDNGMKDDV GQKMVSLVMS GWSVAEGTQC 

       610        620        630        640        650        660 
NICSMPILQD PQTNSMHCIS CGEVSNSVML ISMQQQMGYG TATMASYRRM SAQNEMQKHL 

       670        680        690        700        710        720 
MLGWTISEYN CQSCTNPLLT ESFQGKYKCV SCNNASSGSK SYAPKLQQVC NKQTNRGRDP 

       730 
TPSNSHASSS HFFSDSPSD 

« Hide

References

[1]"The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism."
Armbrust E.V., Berges J.A., Bowler C., Green B.R., Martinez D., Putnam N.H., Zhou S., Allen A.E., Apt K.E., Bechner M., Brzezinski M.A., Chaal B.K., Chiovitti A., Davis A.K., Demarest M.S., Detter J.C., Glavina T., Goodstein D. expand/collapse author list , Hadi M.Z., Hellsten U., Hildebrand M., Jenkins B.D., Jurka J., Kapitonov V.V., Kroger N., Lau W.W., Lane T.W., Larimer F.W., Lippmeier J.C., Lucas S., Medina M., Montsant A., Obornik M., Parker M.S., Palenik B., Pazour G.J., Richardson P.M., Rynearson T.A., Saito M.A., Schwartz D.C., Thamatrakoln K., Valentin K., Vardi A., Wilkerson F.P., Rokhsar D.S.
Science 306:79-86(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: CCMP1335 EMBL EED94929.1.
[2]"The Phaeodactylum genome reveals the evolutionary history of diatom genomes."
Bowler C., Allen A.E., Badger J.H., Grimwood J., Jabbari K., Kuo A., Maheswari U., Martens C., Maumus F., Otillar R.P., Rayko E., Salamov A., Vandepoele K., Beszteri B., Gruber A., Heijde M., Katinka M., Mock T. expand/collapse author list , Valentin K., Verret F., Berges J.A., Brownlee C., Cadoret J.P., Chiovitti A., Choi C.J., Coesel S., De Martino A., Detter J.C., Durkin C., Falciatore A., Fournet J., Haruta M., Huysman M.J., Jenkins B.D., Jiroutova K., Jorgensen R.E., Joubert Y., Kaplan A., Kroger N., Kroth P.G., La Roche J., Lindquist E., Lommer M., Martin-Jezequel V., Lopez P.J., Lucas S., Mangogna M., McGinnis K., Medlin L.K., Montsant A., Oudot-Le Secq M.P., Napoli C., Obornik M., Parker M.S., Petit J.L., Porcel B.M., Poulsen N., Robison M., Rychlewski L., Rynearson T.A., Schmutz J., Shapiro H., Siaut M., Stanley M., Sussman M.R., Taylor A.R., Vardi A., von Dassow P., Vyverman W., Willis A., Wyrwicz L.S., Rokhsar D.S., Weissenbach J., Armbrust E.V., Green B.R., Van de Peer Y., Grigoriev I.V.
Nature 456:239-244(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: CCMP1335 EMBL EED94929.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CM000639 Genomic DNA. Translation: EED94929.1.
RefSeqXP_002287486.1. XM_002287450.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblProtistsThaps21476; Thaps21476; Thaps21476.
GeneID7452482.
KEGGtps:THAPSDRAFT_21476.

Phylogenomic databases

eggNOGNOG315789.
ProtClustDBCLSN2712802.

Family and domain databases

InterProIPR009563. SSSCA1.
[Graphical view]
PfamPF06677. Auto_anti-p27. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB8BVG4_THAPS
AccessionPrimary (citable) accession number: B8BVG4
Entry history
Integrated into UniProtKB/TrEMBL: March 3, 2009
Last sequence update: March 3, 2009
Last modified: November 13, 2013
This is version 18 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)