B8BVG4 (B8BVG4_THAPS) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Predicted protein EMBL EED94929.1

Gene names

ORF Names:

THAPSDRAFT_21476 EMBL EED94929.1

Organism

Thalassiosira pseudonana (Marine diatom) (Cyclotella nana) [Reference proteome]

Taxonomic identifier

35128 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Stramenopiles › Bacillariophyta › Coscinodiscophyceae › Thalassiosirophycidae › Thalassiosirales › Thalassiosiraceae › Thalassiosira

Protein attributes

Sequence length	739 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
None. [Check GOA]

Sequences

	Sequence		Length	Mass (Da)
	B8BVG4 [UniParc]. Last modified March 3, 2009. Version 1. Checksum: 3A7345C4F41194C4	FASTA	739	81,094
	10 20 30 40 50 60 MSGTENEDTA AAITSHSAGM IGMIASALAS LSAEDDTVVQ ANCCLEDADI EAMGSHKDEE 70 80 90 100 110 120 TTSAAVNKNK NGANTKATAQ EIITNKLLAG YTLNGEVCDK CMMPTMAMNG VASCVVCTSE 130 140 150 160 170 180 FTARRSVATD VYATKILEGY VMNESLCDKC DMPMMEHDKA IACVFCKEEV VGEEAAVEET 190 200 210 220 230 240 TVENEEYVDT AKSELGVDED EEAATDRKEL SRTEKLAASL QEINAQLNGK RESQLDQAEK 250 260 270 280 290 300 EIREMIRHLE IYEKQSKDAN ASLQDFYSYK AAVSCAMSEL QRKIPDNIFA EVTRVEEGRN 310 320 330 340 350 360 DAGFEDWERR VFEGLMLMND RRTEGWTIGD GKDGAYAPRD DTVEERDSQE KSAFIEIPKA 370 380 390 400 410 420 VLVNDSIQYE ANVVDDVEHF NHEPRSGIAI EHFHSSVNSA PTLSCNAPNF GCNIGESILP 430 440 450 460 470 480 SLRSLFAGAS GVNKEDKLKT QQEAKSEISH LLAQGWQVSA ENCEACDMPL FTIGYGMNEL 490 500 510 520 530 540 KVCVLCGPVN DKSIGQHHHY EPTQNLGFEE RASNEMARLM MSGWTISSTI CEHCVIPKIS 550 560 570 580 590 600 NPVTKQLHCV GCSIAPNQQS NQYGATHDIF DMDNGMKDDV GQKMVSLVMS GWSVAEGTQC 610 620 630 640 650 660 NICSMPILQD PQTNSMHCIS CGEVSNSVML ISMQQQMGYG TATMASYRRM SAQNEMQKHL 670 680 690 700 710 720 MLGWTISEYN CQSCTNPLLT ESFQGKYKCV SCNNASSGSK SYAPKLQQVC NKQTNRGRDP 730 TPSNSHASSS HFFSDSPSD

References

[1]

"The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism." Armbrust E.V., Berges J.A., Bowler C., Green B.R., Martinez D., Putnam N.H., Zhou S., Allen A.E., Apt K.E., Bechner M., Brzezinski M.A., Chaal B.K., Chiovitti A., Davis A.K., Demarest M.S., Detter J.C., Glavina T., Goodstein D. , Hadi M.Z., Hellsten U., Hildebrand M., Jenkins B.D., Jurka J., Kapitonov V.V., Kroger N., Lau W.W., Lane T.W., Larimer F.W., Lippmeier J.C., Lucas S., Medina M., Montsant A., Obornik M., Parker M.S., Palenik B., Pazour G.J., Richardson P.M., Rynearson T.A., Saito M.A., Schwartz D.C., Thamatrakoln K., Valentin K., Vardi A., Wilkerson F.P., Rokhsar D.S. Science 306:79-86(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: CCMP1335 EMBL EED94929.1.

[2]

"The Phaeodactylum genome reveals the evolutionary history of diatom genomes." Bowler C., Allen A.E., Badger J.H., Grimwood J., Jabbari K., Kuo A., Maheswari U., Martens C., Maumus F., Otillar R.P., Rayko E., Salamov A., Vandepoele K., Beszteri B., Gruber A., Heijde M., Katinka M., Mock T. , Valentin K., Verret F., Berges J.A., Brownlee C., Cadoret J.P., Chiovitti A., Choi C.J., Coesel S., De Martino A., Detter J.C., Durkin C., Falciatore A., Fournet J., Haruta M., Huysman M.J., Jenkins B.D., Jiroutova K., Jorgensen R.E., Joubert Y., Kaplan A., Kroger N., Kroth P.G., La Roche J., Lindquist E., Lommer M., Martin-Jezequel V., Lopez P.J., Lucas S., Mangogna M., McGinnis K., Medlin L.K., Montsant A., Oudot-Le Secq M.P., Napoli C., Obornik M., Parker M.S., Petit J.L., Porcel B.M., Poulsen N., Robison M., Rychlewski L., Rynearson T.A., Schmutz J., Shapiro H., Siaut M., Stanley M., Sussman M.R., Taylor A.R., Vardi A., von Dassow P., Vyverman W., Willis A., Wyrwicz L.S., Rokhsar D.S., Weissenbach J., Armbrust E.V., Green B.R., Van de Peer Y., Grigoriev I.V. Nature 456:239-244(2008) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: CCMP1335 EMBL EED94929.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CM000639 Genomic DNA. Translation: EED94929.1.
RefSeq	XP_002287486.1. XM_002287450.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblProtists	Thaps21476; Thaps21476; Thaps21476.
GeneID	7452482.
KEGG	tps:THAPSDRAFT_21476.
Phylogenomic databases
eggNOG	NOG315789.
ProtClustDB	CLSN2712802.
Family and domain databases
InterPro	IPR009563. Unchr_Sjogrens_synd/UPF0148. [Graphical view]
Pfam	PF06677. Auto_anti-p27. 2 hits. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B8BVG4_THAPS

Accession

Primary (citable) accession number: B8BVG4

Entry history

Integrated into UniProtKB/TrEMBL:	March 3, 2009
Last sequence update:	March 3, 2009
Last modified:	March 6, 2013
This is version 15 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)