B8BR45 (B8BR45_THAPS) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Cysteinyl-trna synthetase EMBL EED96466.1
EC=6.1.1.16 EMBL EED96466.1

Gene names

Name:	CTS1 EMBL EED96466.1
ORF Names:	THAPSDRAFT_1499 EMBL EED96466.1

Organism

Thalassiosira pseudonana (Marine diatom) (Cyclotella nana) [Reference proteome]

Taxonomic identifier

35128 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Stramenopiles › Bacillariophyta › Coscinodiscophyceae › Thalassiosirophycidae › Thalassiosirales › Thalassiosiraceae › Thalassiosira

Protein attributes

Sequence length	807 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

Ontologies

Keywords
Molecular function	Aminoacyl-tRNA synthetase EMBL EED96466.1 Ligase
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	cysteinyl-tRNA aminoacylation Inferred from electronic annotation. Source: InterPro
Cellular_component	cytoplasm Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro cysteine-tRNA ligase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B8BR45 [UniParc]. Last modified March 3, 2009. Version 1. Checksum: CFE74D765C385C8C	FASTA	807	89,823
	10 20 30 40 50 60 MSLSGTGTFC QPTCCTTTPS ESLRHPWFPP KASSDPIASG HLLLRNTLTG KKEPFVPMQS 70 80 90 100 110 120 RHVKWYTCGP TVYDSSHVGH ARTYLSFDIM RRIMTDYFHY NVLYQINTTD IDDKIILRAR 130 140 150 160 170 180 QNELMRLLEE DPSVDFDKLV VLAKEALEEA KAKSDEKKGV IVAAIEKAGE EKNSRARTEQ 190 200 210 220 230 240 EGLLEQHLVK RKNLDKDEVN ILEACGAESG KDARSDLLVA AKSVLAEKLD REKGHLITDH 250 260 270 280 290 300 SVFNAHARRY EREFMEDMAA LGIREPDILT RVTEYVPKIV AFVETIISKG LAYKSNGSVY 310 320 330 340 350 360 LSLDAFQEAG HNYRKLNPAG PGGAATTAAE MAEGEGALGG VGGDSEKRNP NDFALWKASK 370 380 390 400 410 420 AGEPAWESPF GPGRPGWHIE CSVVAGDILG ERIDIHSGGE DLKFPHHDNE LAQSEACFGC 430 440 450 460 470 480 NQWVNYFTHT GHLHIEGLKM SKSLKNFITI RQALEHNTAR QLRIMFLLQG WDQPMNYSDQ 490 500 510 520 530 540 TIDDARSKET TFKSFFREVE ALTRDDYLSE EVGWRMEEHD HKLADAYLTA RQSVHESLLD 550 560 570 580 590 600 NFNTKEAMGA LLKVINEANA YLRTANAKPS VLLLRSIATY ITEILKVFGV VSGSDEFGFG 610 620 630 640 650 660 SGGSGDGNVE STDGSGSEPF IGAMVSFRES VRNEALEAAK GGDAQAAIQS ILQICDGLRD 670 680 690 700 710 720 EVLPKLGVRL EDRPAGTMWN LEDPAVMMRE MEEKAAKERE IQVSKLEKQL VAREKELEKV 730 740 750 760 770 780 KSSMVKPHDL FRTEEFKEWD EAGVPTTMAN GEPVSGGQVK KKKKAIEKQE KAYNDLMTKS 790 800 GNNPQELLDG TQREVDYIKS KLAELSL

References

[1]

"The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism." Armbrust E.V., Berges J.A., Bowler C., Green B.R., Martinez D., Putnam N.H., Zhou S., Allen A.E., Apt K.E., Bechner M., Brzezinski M.A., Chaal B.K., Chiovitti A., Davis A.K., Demarest M.S., Detter J.C., Glavina T., Goodstein D. , Hadi M.Z., Hellsten U., Hildebrand M., Jenkins B.D., Jurka J., Kapitonov V.V., Kroger N., Lau W.W., Lane T.W., Larimer F.W., Lippmeier J.C., Lucas S., Medina M., Montsant A., Obornik M., Parker M.S., Palenik B., Pazour G.J., Richardson P.M., Rynearson T.A., Saito M.A., Schwartz D.C., Thamatrakoln K., Valentin K., Vardi A., Wilkerson F.P., Rokhsar D.S. Science 306:79-86(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: CCMP1335 EMBL EED96466.1.

[2]

"The Phaeodactylum genome reveals the evolutionary history of diatom genomes." Bowler C., Allen A.E., Badger J.H., Grimwood J., Jabbari K., Kuo A., Maheswari U., Martens C., Maumus F., Otillar R.P., Rayko E., Salamov A., Vandepoele K., Beszteri B., Gruber A., Heijde M., Katinka M., Mock T. , Valentin K., Verret F., Berges J.A., Brownlee C., Cadoret J.P., Chiovitti A., Choi C.J., Coesel S., De Martino A., Detter J.C., Durkin C., Falciatore A., Fournet J., Haruta M., Huysman M.J., Jenkins B.D., Jiroutova K., Jorgensen R.E., Joubert Y., Kaplan A., Kroger N., Kroth P.G., La Roche J., Lindquist E., Lommer M., Martin-Jezequel V., Lopez P.J., Lucas S., Mangogna M., McGinnis K., Medlin L.K., Montsant A., Oudot-Le Secq M.P., Napoli C., Obornik M., Parker M.S., Petit J.L., Porcel B.M., Poulsen N., Robison M., Rychlewski L., Rynearson T.A., Schmutz J., Shapiro H., Siaut M., Stanley M., Sussman M.R., Taylor A.R., Vardi A., von Dassow P., Vyverman W., Willis A., Wyrwicz L.S., Rokhsar D.S., Weissenbach J., Armbrust E.V., Green B.R., Van de Peer Y., Grigoriev I.V. Nature 456:239-244(2008) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: CCMP1335 EMBL EED96466.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CM000638 Genomic DNA. Translation: EED96466.1.
RefSeq	XP_002286825.1. XM_002286789.1.
3D structure databases
ProteinModelPortal	B8BR45.
ModBase	Search...
Protein-protein interaction databases
STRING	35128.JGI1499.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblProtists	Thaps1499; Thaps1499; Thaps1499.
GeneID	7453402.
KEGG	tps:THAPSDRAFT_1499.
Phylogenomic databases
eggNOG	COG0215.
HOGENOM	HOG000245252.
KO	K01883.
Family and domain databases
Gene3D	3.40.50.620. 2 hits.
HAMAP	MF_00041. Cys_tRNA_synth.
InterPro	IPR015803. Cys-tRNA-ligase. IPR015273. Cys-tRNA-synt_Ia_DALR. IPR024909. Cys-tRNA/MSH_ligase. IPR014729. Rossmann-like_a/b/a_fold. IPR009080. tRNAsynth_1a_anticodon-bd. [Graphical view]
PANTHER	PTHR10890. PTHR10890. 1 hit.
Pfam	PF01406. tRNA-synt_1e. 1 hit. [Graphical view]
PRINTS	PR00983. TRNASYNTHCYS.
SMART	SM00840. DALR_2. 1 hit. [Graphical view]
SUPFAM	SSF47323. tRNAsyn_1a_bind. 1 hit.
TIGRFAMs	TIGR00435. cysS. 1 hit.
ProtoNet	Search...

Entry information

Entry name

B8BR45_THAPS

Accession

Primary (citable) accession number: B8BR45

Entry history

Integrated into UniProtKB/TrEMBL:	March 3, 2009
Last sequence update:	March 3, 2009
Last modified:	April 3, 2013
This is version 25 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)