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Protein

DNA-directed RNA polymerase subunit beta

Gene

OsI_11967

Organism
Oryza sativa subsp. indica (Rice)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.UniRule annotation

Catalytic activityi

Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1).UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionNucleotidyltransferaseUniRule annotation, Transferase
Biological processTranscription

Names & Taxonomyi

Protein namesi
Recommended name:
DNA-directed RNA polymerase subunit betaUniRule annotation (EC:2.7.7.6UniRule annotation)
Gene namesi
ORF Names:OsI_11967Imported
OrganismiOryza sativa subsp. indica (Rice)Imported
Taxonomic identifieri39946 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryzaOryza sativa
Proteomesi
  • UP000007015 Componenti: Chromosome 3

Subcellular locationi

    Keywords - Cellular componenti

    DNA-directed RNA polymeraseUniRule annotation

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)DescriptionActionsGraphical viewLength
    Signal peptidei1 – 23Sequence analysisAdd BLAST23
    ChainiPRO_500286777524 – 1117DNA-directed RNA polymerase subunit betaSequence analysisAdd BLAST1094

    Expressioni

    Gene expression databases

    ExpressionAtlasiB8AR02. baseline and differential.

    Interactioni

    Protein-protein interaction databases

    STRINGi39946.BGIOSGA012829-PA.

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)DescriptionActionsGraphical viewLength
    Domaini110 – 482RNA_pol_Rpb2_1InterPro annotationAdd BLAST373
    Domaini260 – 433RNA_pol_Rpb2_2InterPro annotationAdd BLAST174
    Domaini570 – 629RNA_pol_Rpb2_4InterPro annotationAdd BLAST60
    Domaini652 – 697RNA_pol_Rpb2_5InterPro annotationAdd BLAST46
    Domaini703 – 937RNA_pol_Rpb2_6InterPro annotationAdd BLAST235
    Domaini948 – 1021RNA_pol_Rpb2_6InterPro annotationAdd BLAST74
    Domaini1023 – 1113RNA_pol_Rpb2_7InterPro annotationAdd BLAST91

    Sequence similaritiesi

    Belongs to the RNA polymerase beta chain family.UniRule annotation

    Keywords - Domaini

    SignalSequence analysis

    Phylogenomic databases

    eggNOGiKOG0215. Eukaryota.
    COG0085. LUCA.
    HOGENOMiHOG000222962.
    OMAiMLCTSDT.
    OrthoDBiEOG093600L5.

    Family and domain databases

    CDDicd00653. RNA_pol_B_RPB2. 1 hit.
    Gene3Di2.40.270.10. 3 hits.
    InterProiView protein in InterPro
    IPR015712. DNA-dir_RNA_pol_su2.
    IPR007120. DNA-dir_RNAP_su2_dom.
    IPR037033. DNA-dir_RNAP_su2_hyb_sf.
    IPR007121. RNA_pol_bsu_CS.
    IPR007644. RNA_pol_bsu_protrusion.
    IPR007642. RNA_pol_Rpb2_2.
    IPR007646. RNA_pol_Rpb2_4.
    IPR007647. RNA_pol_Rpb2_5.
    IPR007641. RNA_pol_Rpb2_7.
    PANTHERiPTHR20856. PTHR20856. 3 hits.
    PfamiView protein in Pfam
    PF04563. RNA_pol_Rpb2_1. 1 hit.
    PF04561. RNA_pol_Rpb2_2. 1 hit.
    PF04566. RNA_pol_Rpb2_4. 1 hit.
    PF04567. RNA_pol_Rpb2_5. 1 hit.
    PF00562. RNA_pol_Rpb2_6. 2 hits.
    PF04560. RNA_pol_Rpb2_7. 1 hit.
    PROSITEiView protein in PROSITE
    PS01166. RNA_POL_BETA. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    B8AR02-1 [UniParc]FASTAAdd to basket

    « Hide

            10         20         30         40         50
    MFCCISTVPL FPLFFWLLSF RYAPPPPPPP PPPPSHSHSH SHFHPIQSAA
    60 70 80 90 100
    VTTVAAAVDD DMERTEEEEA PAAKDPNASL PSPTYRSLAA PVTKPVDKFA
    110 120 130 140 150
    LLPAFLKVRG LVKEHIDSFN YFITKGIRNI VKANNRIEAR NNPSIFLRQY
    160 170 180 190 200
    NSVRVGVPSV QVQYIAEKIT PHFCRLTDRT YSAPVLADIE YTVGKQYELK
    210 220 230 240 250
    RKPNFIIGYL PIMLRSHACV LNGKDEAELA RYGECPLDPG GYFIVKGTEK
    260 270 280 290 300
    VILIQEQLSK NRIIIDTDSK GRVIASVTSS THEIKSKTVI FMEKEKIYLQ
    310 320 330 340 350
    LNQFTKPIPI IVVMKAMGME SDQEVAQMVG RDPRYGDLLY PSIQECAFER
    360 370 380 390 400
    IYTLKQALQY MDDKVMYPGA GNQKEGRSKS ILRDVFVAHV PVESGNFRPK
    410 420 430 440 450
    CIYTAVMLRR MMDAILNADT FDDKDYVGNK RLELSGQLIS LLFEDLFKTM
    460 470 480 490 500
    NSNAVELMNK TSEKIHSSPL DLSLHIKENI ITHGLERAIS TGNWDIKRFR
    510 520 530 540 550
    MHRKGVSQVL SRLSYMASLG YMTRITPQFE KTRKTSGPRA LQPSQCYSLG
    560 570 580 590 600
    VEDLSLLSGE EIHASGSFLV MFNGLILGKH RQPQRFANAM RKLRRSGIIG
    610 620 630 640 650
    EFVSIFVNEK QHCIHIASDG GRVCRPLIIA DKGIPRVKEH HMKQLRDGIR
    660 670 680 690 700
    SFDDFLRDGL IEYLDVNEEN NALIALYEHE DQDDVQRSSI THIEIEPLTI
    710 720 730 740 750
    LGLFRADSLL YLLVYAQRPL LTTKTIELVG YDKLGAGQNA TVAVMSYSGY
    760 770 780 790 800
    DIEDAIVMNK SSLDRGFGRC IAMKKYTVTK EKYEGGYSDR IVKPQRDKDG
    810 820 830 840 850
    ALLKQNMRAL DEDGFAAPGL IIRNHDIYVN KQTPRNTKRD SGAHLTDRDY
    860 870 880 890 900
    KDSPAVYKGV DGETTVVDRV MLCSDTDEKL IIKCIIRHTR RPEVGDKFSS
    910 920 930 940 950
    RHGQKGVCGT IVQQEDFPFS ERGICPDLIM NPHGFPSAFG EPSGNADKVE
    960 970 980 990 1000
    DISRTLVKHG FSYNGKDLLY SGILGHPCQA YVFMGPIYYQ KLKHMVLDKM
    1010 1020 1030 1040 1050
    HARASGPRVL LTRQPTEGRS RDGGLRLGEM ERDCLIAYGA SMLIFERLLI
    1060 1070 1080 1090 1100
    SSDPYQVQVC RKCGLLGYYN HKLKASYCSM CKNGENMAKM RMPYACKLLF
    1110
    QELQAMNVVP RLKLTEG
    Length:1,117
    Mass (Da):126,069
    Last modified:March 3, 2009 - v1
    Checksum:iBF478A25AC227BB8
    GO

    Sequence databases

    Select the link destinations:
    EMBLi
    GenBanki
    DDBJi
    Links Updated
    CM000128 Genomic DNA. Translation: EEC75437.1.

    Genome annotation databases

    EnsemblPlantsiBGIOSGA012829-TA; BGIOSGA012829-PA; BGIOSGA012829.
    GrameneiBGIOSGA012829-TA; BGIOSGA012829-PA; BGIOSGA012829.

    Similar proteinsi

    Entry informationi

    Entry nameiB8AR02_ORYSI
    AccessioniPrimary (citable) accession number: B8AR02
    Entry historyiIntegrated into UniProtKB/TrEMBL: March 3, 2009
    Last sequence update: March 3, 2009
    Last modified: December 20, 2017
    This is version 50 of the entry and version 1 of the sequence. See complete history.
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported