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Protein
Submitted name:

PPARGC1B protein

Gene

PPARGC1B

Organism
Homo sapiens (Human)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
PPARGC1B proteinImported
Gene namesi
Name:PPARGC1BImported
OrganismiHomo sapiens (Human)Imported
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA134953410.

PTM / Processingi

Proteomic databases

PaxDbiB7ZM40.
PRIDEiB7ZM40.

Expressioni

Gene expression databases

GenevisibleiB7ZM40. HS.

Interactioni

Protein-protein interaction databases

STRINGi9606.ENSP00000312649.

Structurei

3D structure databases

ProteinModelPortaliB7ZM40.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini863 – 92866RRM (RNA recognition motif)InterPro annotationAdd
BLAST

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili385 – 41531Sequence analysisAdd
BLAST

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

eggNOGiENOG410IIJJ. Eukaryota.
ENOG4111PZ5. LUCA.
HOGENOMiHOG000236356.
HOVERGENiHBG080730.

Family and domain databases

Gene3Di3.30.70.330. 1 hit.
InterProiIPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
[Graphical view]
PfamiPF00076. RRM_1. 1 hit.
[Graphical view]
SMARTiSM00360. RRM. 1 hit.
[Graphical view]
SUPFAMiSSF54928. SSF54928. 1 hit.
PROSITEiPS50102. RRM. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B7ZM40-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAGNDCGALL DEELSSFFLN YLADTQGGGS GEEQLYADFP ELDLSQLDAS
60 70 80 90 100
DFDSATCFGE LQWCPENSET EPNQYSPDDS ELFQIDSENE ALLAELTKTL
110 120 130 140 150
DDIPEDDVGL AAFPALDGGD ALSCTSASPA PSSAPPSPAP EKPSAPAPEV
160 170 180 190 200
DELSLADSTQ DKKAPMMQSQ SRSCTELHKH LTSAQCCLQD RGLQPPCLQS
210 220 230 240 250
PRLPAKEDKE PGEDCPSPQP APASPRDSLA LGRADPGAPV SQEDMQAMVQ
260 270 280 290 300
LISYMHTYCL PQRKLPPQTP EPLPKACSNP SQQVRSRPWS RHHSKASWAE
310 320 330 340 350
FSILRELLAQ DVLCDVSKPY RLATPVYASL TPRSRPRPPK DSQASPGRPS
360 370 380 390 400
SVEEVRIAAS PKSTGPRPSL RPLRLEVKRE VRRPARLQQQ EEEDEEEEEE
410 420 430 440 450
EEEEEKEEEE EWGRKRPGRG LPWTKLGRKL ESSVCPVRRS RRLNPELGPW
460 470 480 490 500
LTFADEPLVP SEPQGALPSL CLAPKAYDVE RELGSPTDED SGQDQQLLRG
510 520 530 540 550
PQIPALESPC ESGCGDMDED PSCPQLPPRD SPRCLMLALS QSDPTFGKKS
560 570 580 590 600
FEQTLTVELC GTAGLTPPTT PPYKPTEEDP FKPDIKHSLG KEIALSLPSP
610 620 630 640 650
EGLSLKATPG AAHKLPKKHP ERSELLSHLR HATAQPASQA GQKRPFSCSF
660 670 680 690 700
GDHDYCQVLR PEGVLQRKVL RSWEPSGVHL EDWPQQGAPW AEAQAPGREE
710 720 730 740 750
DRSCDAGAPP KDSTLLRDHE IRASLTKHFG LLETALEEED LASCKSPEYD
760 770 780 790 800
TVFEDSSSSS GESSFLPEEE EEEGEEEEED DEEEDSGVSP TCSDHCPYQS
810 820 830 840 850
PPSKANRQLC SRSRSSSGSS PCHSWSPATR RNFRCESRGP CSDRTPSIRH
860 870 880 890 900
ARKRREKAIG EGRVVYIQNL SSDMSSRELK RRFEVFGEIE ECEVLTRNRR
910 920 930 940 950
GEKYGFITYR CSEHAALSLT KGAALRKRNE PSFQLSYGGL RHFCWPRYTD
960 970 980
YDSNSEEALS ASGKSKYEAM DFDSLLKEAQ QSLH
Length:984
Mass (Da):108,839
Last modified:March 3, 2009 - v1
Checksum:i049352A0FA80FFDD
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC144251 mRNA. Translation: AAI44252.1.
RefSeqiNP_001166169.1. NM_001172698.1.
UniGeneiHs.483816.

Genome annotation databases

GeneIDi133522.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC144251 mRNA. Translation: AAI44252.1.
RefSeqiNP_001166169.1. NM_001172698.1.
UniGeneiHs.483816.

3D structure databases

ProteinModelPortaliB7ZM40.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi9606.ENSP00000312649.

Proteomic databases

PaxDbiB7ZM40.
PRIDEiB7ZM40.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi133522.

Organism-specific databases

CTDi133522.
PharmGKBiPA134953410.

Phylogenomic databases

eggNOGiENOG410IIJJ. Eukaryota.
ENOG4111PZ5. LUCA.
HOGENOMiHOG000236356.
HOVERGENiHBG080730.

Miscellaneous databases

ChiTaRSiPPARGC1B. human.
GenomeRNAii133522.

Gene expression databases

GenevisibleiB7ZM40. HS.

Family and domain databases

Gene3Di3.30.70.330. 1 hit.
InterProiIPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
[Graphical view]
PfamiPF00076. RRM_1. 1 hit.
[Graphical view]
SMARTiSM00360. RRM. 1 hit.
[Graphical view]
SUPFAMiSSF54928. SSF54928. 1 hit.
PROSITEiPS50102. RRM. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiB7ZM40_HUMAN
AccessioniPrimary (citable) accession number: B7ZM40
Entry historyi
Integrated into UniProtKB/TrEMBL: March 3, 2009
Last sequence update: March 3, 2009
Last modified: September 7, 2016
This is version 41 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.