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Protein
Submitted name:

Histone deacetylase 5

Gene

Hdac5

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Names & Taxonomyi

Protein namesi
Submitted name:
Histone deacetylase 5Imported
Gene namesi
Name:Hdac5Imported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 11

Organism-specific databases

MGIiMGI:1333784. Hdac5.

PTM / Processingi

Proteomic databases

PaxDbiB7ZDF6.
PeptideAtlasiB7ZDF6.

Expressioni

Gene expression databases

BgeeiB7ZDF6.
ExpressionAtlasiB7ZDF6. baseline and differential.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000102770.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini58 – 14689HDAC4_GlnInterPro annotationAdd
BLAST

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili108 – 15245Sequence analysisAdd
BLAST

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

eggNOGiKOG1343. Eukaryota.
COG0123. LUCA.
GeneTreeiENSGT00530000062809.

Family and domain databases

InterProiIPR024643. Hist_deacetylase_Gln_rich_N.
[Graphical view]
PfamiPF12203. HDAC4_Gln. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Fragment.

B7ZDF6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSGREPSLEI LPRTPLHSIP VAVEVKPVLP GAMPSSMGGG GGGSPSPVEL
60 70 80 90 100
RGALAGPMDP ALREQQLQQE LLVLKQQQQL QKQLLFAEFQ KQHDHLTRQH
110 120 130 140 150
EVQLQKHLKQ QQEMLAAKRQ QELEQQRQRE QQRQEELEKQ RLEQQLLILR

NKEKSKES
Length:158
Mass (Da):18,109
Last modified:March 3, 2009 - v1
Checksum:i200E5596E137229B
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei158 – 1581Imported

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL954730 Genomic DNA. No translation available.

Genome annotation databases

EnsembliENSMUST00000131254; ENSMUSP00000118108; ENSMUSG00000008855.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL954730 Genomic DNA. No translation available.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000102770.

Proteomic databases

PaxDbiB7ZDF6.
PeptideAtlasiB7ZDF6.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000131254; ENSMUSP00000118108; ENSMUSG00000008855.

Organism-specific databases

MGIiMGI:1333784. Hdac5.

Phylogenomic databases

eggNOGiKOG1343. Eukaryota.
COG0123. LUCA.
GeneTreeiENSGT00530000062809.

Miscellaneous databases

ChiTaRSiHdac5. mouse.
SOURCEiSearch...

Gene expression databases

BgeeiB7ZDF6.
ExpressionAtlasiB7ZDF6. baseline and differential.

Family and domain databases

InterProiIPR024643. Hist_deacetylase_Gln_rich_N.
[Graphical view]
PfamiPF12203. HDAC4_Gln. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: C57BL/6JImported.
  2. Ensembl
    Submitted (JUN-2011) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: C57BL/6JImported.

Entry informationi

Entry nameiB7ZDF6_MOUSE
AccessioniPrimary (citable) accession number: B7ZDF6
Entry historyi
Integrated into UniProtKB/TrEMBL: March 3, 2009
Last sequence update: March 3, 2009
Last modified: July 6, 2016
This is version 60 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.