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Protein
Submitted name:

cDNA FLJ52874, highly similar to Pre-B-cell leukemia transcription factor 1

Gene
N/A
Organism
Homo sapiens (Human)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  1. sequence-specific DNA binding Source: InterPro
  2. sequence-specific DNA binding transcription factor activity Source: InterPro
Complete GO annotation...

Keywords - Ligandi

DNA-bindingUniRule annotation

Names & Taxonomyi

Protein namesi
Submitted name:
cDNA FLJ52874, highly similar to Pre-B-cell leukemia transcription factor 1Imported
OrganismiHomo sapiens (Human)Imported
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo

Subcellular locationi

Nucleus UniRule annotation

GO - Cellular componenti

  1. nucleus Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

NucleusUniRule annotation

PTM / Processingi

Proteomic databases

MaxQBiB7Z774.

Structurei

3D structure databases

ProteinModelPortaliB7Z774.
SMRiB7Z774. Positions 128-200.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

HomeoboxUniRule annotation

Phylogenomic databases

HOVERGENiHBG000122.

Family and domain databases

Gene3Di1.10.10.60. 1 hit.
InterProiIPR017970. Homeobox_CS.
IPR001356. Homeobox_dom.
IPR009057. Homeodomain-like.
IPR005542. PBX.
[Graphical view]
PfamiPF00046. Homeobox. 1 hit.
PF03792. PBC. 1 hit.
[Graphical view]
SMARTiSM00389. HOX. 1 hit.
[Graphical view]
SUPFAMiSSF46689. SSF46689. 1 hit.
PROSITEiPS00027. HOMEOBOX_1. 1 hit.
PS50071. HOMEOBOX_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B7Z774-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MRLDNMLLAE GVAGPEKGGG SAAAAAAAAA SGGAGSDNSV EHSDYRAKLS
60 70 80 90 100
QIRQIYHTEL EKYEQACNEF TTHVMNLLRE QSRTRPISPK EIERMVSIIH
110 120 130 140 150
RKFSSIQMQL KQSTCEAVMI LRSRFLDARR KRRNFNKQAT EILNEYFYSH
160 170 180 190 200
LSNPYPSEEA KEELAKKCGI TVSQVSNWFG NKRIRYKKNI GKFQEEANIY
210 220 230 240 250
AAKTAVTATN VSAHGSQANS PSTPNSAGSS SSFNMSNSGD LFMSVQSLNG
260 270 280 290 300
DSYQGAQVGA NVQSQVDTLR HVISQTGGYS DGLAASQMYS PQGISEIART

Y
Length:301
Mass (Da):33,001
Last modified:March 3, 2009 - v1
Checksum:i7A099E1AC8A99085
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK301540 mRNA. Translation: BAH13510.1.
UniGeneiHs.557097.

Genome annotation databases

UCSCiuc010pkw.1. human.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK301540 mRNA. Translation: BAH13510.1.
UniGeneiHs.557097.

3D structure databases

ProteinModelPortaliB7Z774.
SMRiB7Z774. Positions 128-200.
ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

MaxQBiB7Z774.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

UCSCiuc010pkw.1. human.

Phylogenomic databases

HOVERGENiHBG000122.

Miscellaneous databases

ChiTaRSiPBX1. human.
NextBioi35480162.

Family and domain databases

Gene3Di1.10.10.60. 1 hit.
InterProiIPR017970. Homeobox_CS.
IPR001356. Homeobox_dom.
IPR009057. Homeodomain-like.
IPR005542. PBX.
[Graphical view]
PfamiPF00046. Homeobox. 1 hit.
PF03792. PBC. 1 hit.
[Graphical view]
SMARTiSM00389. HOX. 1 hit.
[Graphical view]
SUPFAMiSSF46689. SSF46689. 1 hit.
PROSITEiPS00027. HOMEOBOX_1. 1 hit.
PS50071. HOMEOBOX_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "NEDO human cDNA sequencing project focused on splicing variants."
    Wakamatsu A., Yamamoto J., Kimura K., Ishii S., Watanabe K., Sugiyama A., Murakawa K., Kaida T., Tsuchiya K., Fukuzumi Y., Kumagai A., Oishi Y., Yamamoto S., Ono Y., Komori Y., Yamazaki M., Kisu Y., Nishikawa T.
    , Sugano S., Nomura N., Isogai T.
    Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Tissue: BreastImported.

Entry informationi

Entry nameiB7Z774_HUMAN
AccessioniPrimary (citable) accession number: B7Z774
Entry historyi
Integrated into UniProtKB/TrEMBL: March 3, 2009
Last sequence update: March 3, 2009
Last modified: October 29, 2014
This is version 50 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.