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Protein
Submitted name:

cDNA FLJ53647, highly similar to Four and a half LIM domains protein 1

Gene
N/A
Organism
Homo sapiens (Human)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  1. zinc ion binding Source: InterPro
Complete GO annotation...

Keywords - Ligandi

Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Submitted name:
cDNA FLJ53647, highly similar to Four and a half LIM domains protein 1Imported
OrganismiHomo sapiens (Human)Imported
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo

PTM / Processingi

Proteomic databases

PRIDEiB7Z5V0.

Expressioni

Gene expression databases

BgeeiB7Z5V0.
ExpressionAtlasiB7Z5V0. baseline and differential.

Structurei

3D structure databases

ProteinModelPortaliB7Z5V0.
SMRiB7Z5V0. Positions 3-39, 53-154, 157-275.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Contains 4 LIM zinc-binding domains.UniRule annotation

Keywords - Domaini

LIM domainUniRule annotationSAAS annotation

Phylogenomic databases

HOVERGENiHBG074526.

Family and domain databases

Gene3Di2.10.110.10. 4 hits.
InterProiIPR001781. Znf_LIM.
[Graphical view]
PfamiPF00412. LIM. 4 hits.
[Graphical view]
SMARTiSM00132. LIM. 4 hits.
[Graphical view]
PROSITEiPS00478. LIM_DOMAIN_1. 3 hits.
PS50023. LIM_DOMAIN_2. 3 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B7Z5V0-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MASHRHSGPS SYKVGTMAEK FDCHYCRDPL QGKKYVQKDG HHCCLKCFDK
60 70 80 90 100
FCANTCVECR KPIGADSKEV HYKNRFWHDT CFRCAKCTTR EDSPKCKGCF
110 120 130 140 150
KAIVAGDQNV EYKGTVWHKD CFTCSNCKQV IGTGSFFPKG EDFYCVTCHE
160 170 180 190 200
TKFAKHCVKC NKAITSGGIT YQDQPWHADC FVCVTCSKKL AGQRFTAVED
210 220 230 240 250
QYYCVDCYKN FVAKKCAGCK NPITGFGKGS SVVAYEGQSW HDYCFHCKKC
260 270
SVNLANKRFV FHQEQVYCPD CAKKL
Length:275
Mass (Da):31,225
Last modified:March 3, 2009 - v1
Checksum:i80CA9E76B8CD94A8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK299450 mRNA. Translation: BAH13036.1.
UniGeneiHs.435369.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK299450 mRNA. Translation: BAH13036.1.
UniGeneiHs.435369.

3D structure databases

ProteinModelPortaliB7Z5V0.
SMRiB7Z5V0. Positions 3-39, 53-154, 157-275.
ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

PRIDEiB7Z5V0.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Phylogenomic databases

HOVERGENiHBG074526.

Miscellaneous databases

NextBioi35479806.

Gene expression databases

BgeeiB7Z5V0.
ExpressionAtlasiB7Z5V0. baseline and differential.

Family and domain databases

Gene3Di2.10.110.10. 4 hits.
InterProiIPR001781. Znf_LIM.
[Graphical view]
PfamiPF00412. LIM. 4 hits.
[Graphical view]
SMARTiSM00132. LIM. 4 hits.
[Graphical view]
PROSITEiPS00478. LIM_DOMAIN_1. 3 hits.
PS50023. LIM_DOMAIN_2. 3 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "NEDO human cDNA sequencing project focused on splicing variants."
    Wakamatsu A., Yamamoto J., Kimura K., Ishii S., Watanabe K., Sugiyama A., Murakawa K., Kaida T., Tsuchiya K., Fukuzumi Y., Kumagai A., Oishi Y., Yamamoto S., Ono Y., Komori Y., Yamazaki M., Kisu Y., Nishikawa T.
    , Sugano S., Nomura N., Isogai T.
    Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Tissue: TongueImported.

Entry informationi

Entry nameiB7Z5V0_HUMAN
AccessioniPrimary (citable) accession number: B7Z5V0
Entry historyi
Integrated into UniProtKB/TrEMBL: March 3, 2009
Last sequence update: March 3, 2009
Last modified: October 29, 2014
This is version 38 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.