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B7XC04 (B7XC04_RHIOR) Unreviewed, UniProtKB/TrEMBL

Last modified March 19, 2014. Version 22. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length604 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Region54 – 596Glucose binding PDB 2V8L
Region70 – 723Chloride 6 binding PDB 4EIB
Region72 – 743Sulfate 4 binding PDB 4EIB

Sites

Metal binding261Zinc PDB 2V8L
Metal binding371Zinc PDB 2V8L
Binding site331Sulfate 1 PDB 2V8M
Binding site331Sulfate 2 PDB 4EIB
Binding site381Chloride 1 PDB 4EIB
Binding site531Sulfate 3 PDB 4EIB
Binding site681Chloride 5; via amide nitrogen PDB 4EIB
Binding site821Chloride 1 PDB 4EIB
Binding site831Glucose PDB 2V8L
Binding site911Sulfate 3 PDB 4EIB
Binding site931Glucose PDB 2V8L
Binding site981Chloride 2 PDB 4EIB
Binding site1061Chloride 6 PDB 4EIB
Binding site1221Acetate PDB 4EIB
Binding site1261Chloride 8 PDB 4EIB
Binding site1271Chloride 7 PDB 4EIB

Sequences

Sequence LengthMass (Da)Tools
B7XC04 [UniParc].

Last modified March 3, 2009. Version 1.
Checksum: 2B426455F3D4200D

FASTA60465,198
        10         20         30         40         50         60 
MQLFNLPLKV SFFLVLSYFS LLVSAASIPS SASVQLDSYN YDGSTFSGKI YVKNIAYSKK 

        70         80         90        100        110        120 
VTVVYADGSD NWNNNGNIIA ASFSGPISGS NYEYWTFSAS VKGIKEFYIK YEVSGKTYYD 

       130        140        150        160        170        180 
NNNSANYQVS TSKPTTTTTA TTTTTAPSTS TTTRPSSSEP ATFPTGNSTI SSWIKKQEDI 

       190        200        210        220        230        240 
SRFAMLRNIN PPGSATGFIA ASLSTAGPDY YYAWTRDAAL TSNVIVYEYN TTLSGNKTIL 

       250        260        270        280        290        300 
NVLKDYVTFS VKTQSTSTVC NCLGEPKFNP DGSGYTGAWG RPQNDGPAER ATTFVLFADS 

       310        320        330        340        350        360 
YLTQTKDASY VTGTLKPAIF KDLDYVVNVW SNGCFDLWEE VNGVHFYTLM VMRKGLLLGA 

       370        380        390        400        410        420 
DFAKRNGDST RASTYSSTAS TIANKISSFW VSSNNWVQVS QSVTGGVSKK GLDVSTLLAA 

       430        440        450        460        470        480 
NLGSVDDGFF TPGSEKILAT AVAVEDSFAS LYPINKNLPS YLGNAIGRYP EDTYNGNGNS 

       490        500        510        520        530        540 
QGNPWFLAVT GYAELYYRAI KEWISNGGVT VSSISLPFFK KFDSSATSGK KYTVGTSDFN 

       550        560        570        580        590        600 
NLAQNIALAA DRFLSTVQLH APKNGSLAEE FDRTTGFSTG ARDLTWSHAS LITASYAKAG 


APAA 

« Hide

References

[1]"Crystal structures of the starch-binding domain from Rhizopus oryzae glucoamylase reveal a polysaccharide-binding path."
Tung J.Y., Chang M.D., Chou W.I., Liu Y.Y., Yeh Y.H., Chang F.Y., Lin S.C., Qiu Z.L., Sun Y.J.
Biochem. J. 416:27-36(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (1.80 ANGSTROMS) OF 26-131 IN COMPLEX WITH GLUCOSE; SULFATE AND ZINC.
[2]"Comparison of sucrose-hydrolyzing enzymes produced by Rhizopus oryzae and Amylomyces rouxii."
Watanabe T., Oda Y.
Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: NBRC 4785 EMBL BAH09876.1.
[3]"Crystal structure of circular permuted RoCBM21 (CP90): dimerisation and proximity of binding sites."
Stephen P., Cheng K.C., Lyu P.C.
PLoS ONE 7:e50488-e50488(2012) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (1.86 ANGSTROMS) OF 26-131 IN COMPLEX WITH ACETATE; CHLORIDE AND SULFATE.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AB444727 Genomic DNA. Translation: BAH09876.1.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
2V8LX-ray1.80A26-131[»]
2V8MX-ray2.30A/B/C/D26-131[»]
4EIBX-ray1.86A/B26-131[»]
ProteinModelPortalB7XC04.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Family and domain databases

Gene3D1.50.10.10. 1 hit.
InterProIPR008928. 6-hairpin_glycosidase-like.
IPR012341. 6hp_glycosidase.
IPR005036. CBM_21.
IPR000165. Glucoamylase.
IPR011613. Glyco_hydro_15.
[Graphical view]
PfamPF03370. CBM_21. 1 hit.
PF00723. Glyco_hydro_15. 1 hit.
[Graphical view]
PRINTSPR00736. GLHYDRLASE15.
SUPFAMSSF48208. SSF48208. 1 hit.
PROSITEPS51159. CBM21. 1 hit.
PS00820. GLUCOAMYLASE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB7XC04_RHIOR
AccessionPrimary (citable) accession number: B7XC04
Entry history
Integrated into UniProtKB/TrEMBL: March 3, 2009
Last sequence update: March 3, 2009
Last modified: March 19, 2014
This is version 22 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)