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Protein

Alpha-amylase

Gene

VS_II0295

Organism
Vibrio tasmaniensis (strain LGP32) (Vibrio splendidus (strain Mel32))
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

Endohydrolysis of (1->4)-alpha-D-glucosidic linkages in polysaccharides containing three or more (1->4)-alpha-linked D-glucose units.UniRule annotation

GO - Molecular functioni

  1. alpha-amylase activity Source: UniProtKB-EC
  2. cation binding Source: InterPro

GO - Biological processi

  1. carbohydrate metabolic process Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

GlycosidaseUniRule annotation, Hydrolase

Keywords - Biological processi

Carbohydrate metabolismUniRule annotation

Enzyme and pathway databases

BioCyciVSPL575788:GH64-3379-MONOMER.

Protein family/group databases

CAZyiGH13. Glycoside Hydrolase Family 13.

Names & Taxonomyi

Protein namesi
Recommended name:
Alpha-amylaseUniRule annotation (EC:3.2.1.1UniRule annotation)
Gene namesi
Ordered Locus Names:VS_II0295Imported
OrganismiVibrio tasmaniensis (strain LGP32) (Vibrio splendidus (strain Mel32))Imported
Taxonomic identifieri575788 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio
ProteomesiUP000009100: Chromosome 2

Interactioni

Protein-protein interaction databases

STRINGi575788.VS_II0295.

Structurei

3D structure databases

ProteinModelPortaliB7VQR3.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the glycosyl hydrolase 13 family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0366.
HOGENOMiHOG000274290.
KOiK01176.
OMAiWDNGDNQ.
OrthoDBiEOG6RZB1B.

Family and domain databases

Gene3Di2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProiIPR006046. Alpha_amylase.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
PRINTSiPR00110. ALPHAAMYLASE.
SUPFAMiSSF51445. SSF51445. 1 hit.

Sequencei

Sequence statusi: Complete.

B7VQR3-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MLSTPATDVI LHAFDWCYAD VMKNAPLIQE LGYKSVLVSP AMKSLRGPKG
60 70 80 90 100
CDRDTGTQWW QRYQPQDYRV IDNQLGDTQD FTAMVNTLKQ HGLRTYVDVV
110 120 130 140 150
FNHMANESSI RGDLTYPNQQ DMASYQQDSE YYESVRLFGD LSKPLFDEND
160 170 180 190 200
FVEAFGIKNW KDTWEVQNGR ITGGASDPGL PTLLDNDNVV TQQRAYLKAL
210 220 230 240 250
KVIGVKGFRI DAAKHMTLSH LRKVWTDDIC EEMHIFGEII TDGGATKEEY
260 270 280 290 300
ELFLEPYLKH TRLGAYDFPL FNTIFKAFEE QGSFKSLINP YCFGQALSNM
310 320 330 340 350
RAITFAVTHD IPNNEVFLEH VMDEVDEQLA HAFILGRDGG VPLVYSELST
360 370 380 390 400
SGILDKSGQP RWLNDWQAPY MKNMIQFHNH VHGEAMQVVE ANDDLLVFVR
410 420 430 440 450
GDKGIVVINK SKRSKTASLN WTGAVTDLLS GEVFECVGKD LTIKVESNQC

MMLTTN
Length:456
Mass (Da):51,676
Last modified:February 10, 2009 - v1
Checksum:iCC020705EE66C492
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FM954973 Genomic DNA. Translation: CAV25697.1.
RefSeqiYP_002394895.1. NC_011744.2.

Genome annotation databases

EnsemblBacteriaiCAV25697; CAV25697; VS_II0295.
GeneIDi7137605.
KEGGivsp:VS_II0295.
PATRICi20148456. VBIVibSpl48387_0289.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FM954973 Genomic DNA. Translation: CAV25697.1.
RefSeqiYP_002394895.1. NC_011744.2.

3D structure databases

ProteinModelPortaliB7VQR3.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi575788.VS_II0295.

Protein family/group databases

CAZyiGH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAV25697; CAV25697; VS_II0295.
GeneIDi7137605.
KEGGivsp:VS_II0295.
PATRICi20148456. VBIVibSpl48387_0289.

Phylogenomic databases

eggNOGiCOG0366.
HOGENOMiHOG000274290.
KOiK01176.
OMAiWDNGDNQ.
OrthoDBiEOG6RZB1B.

Enzyme and pathway databases

BioCyciVSPL575788:GH64-3379-MONOMER.

Family and domain databases

Gene3Di2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProiIPR006046. Alpha_amylase.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
PRINTSiPR00110. ALPHAAMYLASE.
SUPFAMiSSF51445. SSF51445. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Vibrio splendidus str. LGP32 complete genome."
    Mazel D., Le Roux F.
    Submitted (FEB-2009) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: LGP32Imported.

Entry informationi

Entry nameiB7VQR3_VIBTL
AccessioniPrimary (citable) accession number: B7VQR3
Entry historyi
Integrated into UniProtKB/TrEMBL: February 10, 2009
Last sequence update: February 10, 2009
Last modified: January 7, 2015
This is version 39 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.