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Protein
Submitted name:

Vibrio splendidus LGP32 chromosome 1

Gene

VS_1518

Organism
Vibrio tasmaniensis (strain LGP32) (Vibrio splendidus (strain Mel32))
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

BioCyciVSPL575788:GH64-1488-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Vibrio splendidus LGP32 chromosome 1Imported
Gene namesi
Ordered Locus Names:VS_1518Imported
OrganismiVibrio tasmaniensis (strain LGP32) (Vibrio splendidus (strain Mel32))Imported
Taxonomic identifieri575788 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio
ProteomesiUP000009100 Componenti: Chromosome 1

Interactioni

Protein-protein interaction databases

STRINGi575788.VS_1518.

Structurei

3D structure databases

ProteinModelPortaliB7VNV5.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000293070.
KOiK10747.
OMAiVRGYWDG.
OrthoDBiEOG60919Q.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS00333. DNA_LIGASE_A2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B7VNV5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLTTTDINTE QMMRLTKLAI ATLWACSLSS HSSYLPPDHL VLANTYQQGI
60 70 80 90 100
DVSEYWKSEK LDGIRALWDG QHLYTRNGNR IYSPKWFTKN LPKVHLEGEL
110 120 130 140 150
WAGRGKFHLV QSTVLDHTPS DVAWRQIDLM LFDMPGATGD YQKRYYNILH
160 170 180 190 200
WVSMIGEPHV SYIEHVPIQN EEALFYQLDN VDERNGEGLM LRKITSRYQA
210 220 230 240 250
GRSNDLLKLK RHHDAEATVI GYKGGTGKYK GMMGSILVHT EEGVEFYIGS
260 270 280 290
GFSDQMRLAP PEIGSRITFR YNGFTQNGKP KFARFVREKS EY
Length:292
Mass (Da):33,587
Last modified:February 10, 2009 - v1
Checksum:i86418BC86F554DE2
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FM954972 Genomic DNA. Translation: CAV18687.1.
RefSeqiWP_012603960.1. NC_011753.2.
YP_002417130.1. NC_011753.2.

Genome annotation databases

EnsemblBacteriaiCAV18687; CAV18687; VS_1518.
KEGGivsp:VS_1518.
PATRICi20153654. VBIVibSpl48387_2813.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FM954972 Genomic DNA. Translation: CAV18687.1.
RefSeqiWP_012603960.1. NC_011753.2.
YP_002417130.1. NC_011753.2.

3D structure databases

ProteinModelPortaliB7VNV5.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi575788.VS_1518.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAV18687; CAV18687; VS_1518.
KEGGivsp:VS_1518.
PATRICi20153654. VBIVibSpl48387_2813.

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000293070.
KOiK10747.
OMAiVRGYWDG.
OrthoDBiEOG60919Q.

Enzyme and pathway databases

BioCyciVSPL575788:GH64-1488-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS00333. DNA_LIGASE_A2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Vibrio splendidus str. LGP32 complete genome."
    Mazel D., Le Roux F.
    Submitted (FEB-2009) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: LGP32Imported.

Entry informationi

Entry nameiB7VNV5_VIBTL
AccessioniPrimary (citable) accession number: B7VNV5
Entry historyi
Integrated into UniProtKB/TrEMBL: February 10, 2009
Last sequence update: February 10, 2009
Last modified: May 27, 2015
This is version 40 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.