Ribosomal protein S6 modification protein - Escherichia coli O7:K1 (strain IAI39 / ExPEC)

Preferred order of sections

Names and origin

Protein names

Recommended name:
Ribosomal protein S6 modification protein

Gene names

Name:	rimK
Ordered Locus Names:	ECIAI39_0831

Organism

Escherichia coli O7:K1 (strain IAI39 / ExPEC) [Complete proteome] [HAMAP]

Taxonomic identifier

585057 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Escherichia ›

Protein attributes

Sequence length	300 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function

Responsible for the addition of glutamate residues to the C-terminus of ribosomal protein S6 By similarity. HAMAP-Rule MF_01552

Cofactor

Binds 2 magnesium or manganese ions per subunit By similarity.

Sequence similarities

Belongs to the RimK family.

Contains 1 ATP-grasp domain.

Ontologies

Keywords
Biological process	Protein biosynthesis
Ligand	ATP-binding Magnesium Manganese Metal-binding Nucleotide-binding
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	cellular protein modification process Inferred from electronic annotation. Source: InterPro translation Inferred from electronic annotation. Source: HAMAP
Molecular_function	ATP binding Inferred from electronic annotation. Source: HAMAP catalytic activity Inferred from electronic annotation. Source: InterPro magnesium ion binding Inferred from electronic annotation. Source: HAMAP manganese ion binding Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Molecule processing

Chain

1 – 300

300

Ribosomal protein S6 modification protein HAMAP-Rule MF_01552

PRO_1000194368

Regions

Domain

104 – 287

184

ATP-grasp

Nucleotide binding

177 – 187

11

ATP By similarity

Sites

Metal binding

248

1

Magnesium or manganese 1 By similarity

Metal binding

260

1

Magnesium or manganese 1 By similarity

Metal binding

260

1

Magnesium or manganese 2 By similarity

Metal binding

262

1

Magnesium or manganese 2 By similarity

Binding site

141

1

ATP By similarity

Binding site

203

1

ATP By similarity

Sequences

Sequence

Length

Mass (Da)

Tools

B7NPE7 [UniParc].

Last modified February 10, 2009. Version 1.
Checksum: AA1CDDF5DB06E38C
Show »

FASTA

300

32,534

        10         20         30         40         50         60 
MKIAILSRDG TLYSCKRLRE AAIQRGHLVE ILDPLSCYMN INPAASSIHY KGRKLPHFDA 

        70         80         90        100        110        120 
VIPRIGTAIT FYGTAALRQF EMLGSYPLNE SVAIARARDK LRSMQLLARQ GIDLPVTGIA 

       130        140        150        160        170        180 
HSPDDTSDLI DMVGGAPLVV KLVEGTQGIG VVLAETRQAA ESVIDAFRGL NAHILVQEYI 

       190        200        210        220        230        240 
KEAQGCDIRC LVVGDEVVAA IERRAKEGDF RSNLHRGGVA SVARITPQER EIAIKAARTM 

       250        260        270        280        290        300 
ALDVAGVDIL RANRGPLVME VNASPGLEGI EKTTGIDIAG KMIRWIERHA TTEYCLKTGG

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References

[1]

"Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths."
Touchon M., Hoede C., Tenaillon O., Barbe V., Baeriswyl S., Bidet P., Bingen E., Bonacorsi S., Bouchier C., Bouvet O., Calteau A., Chiapello H., Clermont O., Cruveiller S., Danchin A., Diard M., Dossat C., Karoui M.E.

Denamur E.
PLoS Genet. 5:E1000344-E1000344(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: IAI39 / ExPEC.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CU928164 Genomic DNA. Translation: CAR16968.1.
RefSeq	YP_002406856.1. NC_011750.1.
3D structure databases
ProteinModelPortal	B7NPE7.
ModBase	Search...
Protein-protein interaction databases
STRING	585057.ECIAI39_0831.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	CAR16968; CAR16968; ECIAI39_0831.
GeneID	7152219.
KEGG	ect:ECIAI39_0831.
PATRIC	18330274. VBIEscCol51957_0876.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0189.
HOGENOM	HOG000293092.
KO	K05844.
OMA	CREPRLY.
ProtClustDB	PRK10446.
Enzyme and pathway databases
BioCyc	ECOL585057:GJ8I-866-MONOMER.
Family and domain databases
Gene3D	3.30.1490.20. 1 hit. 3.30.470.20. 1 hit. 3.40.50.20. 1 hit.
HAMAP	MF_01552. RimK.
InterPro	IPR011761. ATP-grasp. IPR013651. ATP-grasp_RimK-type. IPR013815. ATP_grasp_subdomain_1. IPR013816. ATP_grasp_subdomain_2. IPR016185. PreATP-grasp_dom. IPR023533. Ribosomal_S6_modifier_RimK. IPR004666. RpS6_RimK/Lys_biosynth_LsyX. [Graphical view]
Pfam	PF08443. RimK. 1 hit. [Graphical view]
TIGRFAMs	TIGR00768. rimK_fam. 1 hit.
PROSITE	PS50975. ATP_GRASP. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

RIMK_ECO7I

Accession

Primary (citable) accession number: B7NPE7

Entry history

Integrated into UniProtKB/Swiss-Prot:	April 14, 2009
Last sequence update:	February 10, 2009
Last modified:	May 1, 2013
This is version 37 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Preferred order of sections

Names and origin

Protein attributes

General annotation (Comments)

Ontologies

Sequence annotation (Features)

Molecule processing

Regions

Sites

Sequences

References

Cross-references

Sequence databases

3D structure databases

Protein-protein interaction databases

Protocols and materials databases

Genome annotation databases

Organism-specific databases

Phylogenomic databases

Enzyme and pathway databases

Family and domain databases

Entry information

Relevant documents