B7L6F7 (B7L6F7_ECO55) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Putative spermidine/putrescine transporter subunit permease of ABC superfamily transporter EMBL CAU97430.1

Gene names

Name:	ydcU EMBL CAU97430.1
Ordered Locus Names:	EC55989_1574 EMBL CAU97430.1

Organism

Escherichia coli (strain 55989 / EAEC) [Complete proteome] [HAMAP] EMBL CAU97430.1

Taxonomic identifier

585055 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Escherichia › Escherichia coli

Protein attributes

Sequence length	313 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Subcellular location	Membrane; Multi-pass membrane protein By similarity RuleBase RU000478.
Sequence similarities	Belongs to the binding-protein-dependent transport system permease family. RuleBase RU000478

Ontologies

Keywords
Biological process	Transport RuleBase RU000478 SAAS SAAS000515
Cellular component	Cell membrane SAAS SAAS000515 Membrane
Domain	Transmembrane Transmembrane helix SAAS SAAS000515
Technical term	Complete proteome
Gene Ontology (GO)
Cellular_component	integral to membrane Inferred from electronic annotation. Source: UniProtKB-KW plasma membrane Inferred from electronic annotation. Source: UniProtKB-KW
Molecular_function	transporter activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B7L6F7 [UniParc]. Last modified February 10, 2009. Version 1. Checksum: E3DD2067311F1B8C	FASTA	313	34,365
	10 20 30 40 50 60 MAMNVLQSPS RPGLGKVSGF FWRNPGLGLF LLLLGPLMWF GIVYFGSLLT LLWQGFYTFD 70 80 90 100 110 120 DFTMSVTPEL TLANIRALFN PANYDIILRT LTMAVAVTIA SAILAFPMAW YMARYTSGKM 130 140 150 160 170 180 KAFFYIAVML PMWASYIVKA YAWTLLLAKD GVAQWFLQHL GLEPLLTAFL TLPAVGGNTL 190 200 210 220 230 240 STSGLGRFLV FLYIWLPFMI LPVQAALERL PPSLLQASAD LGARPRQTFR YVVLPLAIPG 250 260 270 280 290 300 IAAGSIFTFS LTLGDFIVPQ LVGPPGYFIG NMVYSQQGAI GNMPMAAAFT LVPIVLIALY 310 LAFVKRLGAF DAL

References

[1]

"Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths." Touchon M., Hoede C., Tenaillon O., Barbe V., Baeriswyl S., Bidet P., Bingen E., Bonacorsi S., Bouchier C., Bouvet O., Calteau A., Chiapello H., Clermont O., Cruveiller S., Danchin A., Diard M., Dossat C., Karoui M.E. , Frapy E., Garry L., Ghigo J.M., Gilles A.M., Johnson J., Le Bouguenec C., Lescat M., Mangenot S., Martinez-Jehanne V., Matic I., Nassif X., Oztas S., Petit M.A., Pichon C., Rouy Z., Ruf C.S., Schneider D., Tourret J., Vacherie B., Vallenet D., Medigue C., Rocha E.P.C., Denamur E. PLoS Genet. 5:E1000344-E1000344(2009) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: 55989 / EAEC.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CU928145 Genomic DNA. Translation: CAU97430.1.
RefSeq	YP_002402650.1. NC_011748.1.
3D structure databases
ProteinModelPortal	B7L6F7.
ModBase	Search...
Protein-protein interaction databases
STRING	585055.EC55989_1574.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	CAU97430; CAU97430; EC55989_1574.
GeneID	7148400.
KEGG	eck:EC55989_1574.
PATRIC	38476596. VBIEscCol113220_1605.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1176.
HOGENOM	HOG000263581.
KO	K02054.
OMA	AYYMARY.
ProtClustDB	CLSK864269.
Enzyme and pathway databases
BioCyc	ECOL585055:GJOM-1609-MONOMER.
Family and domain databases
InterPro	IPR000515. BPD_transp. [Graphical view]
Pfam	PF00528. BPD_transp_1. 1 hit. [Graphical view]
PROSITE	PS50928. ABC_TM1. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B7L6F7_ECO55

Accession

Primary (citable) accession number: B7L6F7

Entry history

Integrated into UniProtKB/TrEMBL:	February 10, 2009
Last sequence update:	February 10, 2009
Last modified:	May 1, 2013
This is version 29 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)