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B7KVH3

- B7KVH3_METC4

UniProt

B7KVH3 - B7KVH3_METC4

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Protein
Submitted name:

ATP dependent DNA ligase

Gene
Mchl_3561
Organism
Methylobacterium extorquens (strain CM4 / NCIMB 13688) (Methylobacterium chloromethanicum)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciMCHL440085:GCXT-3623-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Mchl_3561Imported
OrganismiMethylobacterium extorquens (strain CM4 / NCIMB 13688) (Methylobacterium chloromethanicum)Imported
Taxonomic identifieri440085 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesMethylobacteriaceaeMethylobacterium
ProteomesiUP000002385: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi440085.Mchl_3561.

Structurei

3D structure databases

ProteinModelPortaliB7KVH3.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000036007.
KOiK01971.
OMAiKSASTHN.
OrthoDBiEOG6Q8HXT.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B7KVH3-1 [UniParc]FASTAAdd to Basket

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MNDFAHLLDR LAYEPRRNAK LRLLQDFFAG TPDPERGWAL AAMTGGLTFR    50
EAKPALIRGL VEERVDPVLF SLSHNYVGDL AETTALIWPG PEENPFPRMR 100
GEGALKDEAL PESPPHRGLP ARSAGDEVGR ALSPQAGRGD PPGPGHNNPP 150
PSVPTLAEVV ETLASTPKRE LPQHLAHWLD ALDETGRWAL LKLVTGNLRV 200
GVSARLAKTA VGALGGHEAD AVEEVWHGLK PPYTELFAWV EGRGERPESR 250
NPAPFRPPML SHPVEEFEDL DKLEPEAFSA EWKWDGIRVQ LAGGRDSQGR 300
QVQKVYSRTG EDISDAFPDL AEAITFDGAI DGELLILREG RVQSFNVLQQ 350
RLNRKAVTGK LLEEFPAHVR AYDVLAAEGE DLRPLPFAER RPRLETLVRR 400
LDHARIDLSP LVPFATWDEV AAARADPASA GAGADADAIE GVMLKRLNSP 450
YLPGRPKGPW WKWKREPYVV DAVMMYAQRG HGKRSSFYSD YTFGCWREGA 500
EGEELVPVGK AYHGFTDAEL QKLDRYVRNH TTKRFGPVRE VAYGREAGLV 550
LEIAFEGVQR STRHKSGVAM RFPRVSRIRW DKPAAEADRV DVLERILARG 600
EREVAPGAAM EASE 614
Length:614
Mass (Da):68,146
Last modified:February 10, 2009 - v1
Checksum:i243B18D62F204F2A
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001298 Genomic DNA. Translation: ACK84381.1.
RefSeqiYP_002422309.1. NC_011757.1.

Genome annotation databases

EnsemblBacteriaiACK84381; ACK84381; Mchl_3561.
GeneIDi7113694.
KEGGimch:Mchl_3561.
PATRICi22501404. VBIMetChl132133_3524.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001298 Genomic DNA. Translation: ACK84381.1 .
RefSeqi YP_002422309.1. NC_011757.1.

3D structure databases

ProteinModelPortali B7KVH3.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 440085.Mchl_3561.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACK84381 ; ACK84381 ; Mchl_3561 .
GeneIDi 7113694.
KEGGi mch:Mchl_3561.
PATRICi 22501404. VBIMetChl132133_3524.

Phylogenomic databases

eggNOGi COG1793.
HOGENOMi HOG000036007.
KOi K01971.
OMAi KSASTHN.
OrthoDBi EOG6Q8HXT.

Enzyme and pathway databases

BioCyci MCHL440085:GCXT-3623-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete sequence of chromosome of Methylobacterium chloromethanicum CM4."
    US DOE Joint Genome Institute
    Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Chertkov O., Brettin T., Detter J.C., Han C., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Marx C., Richardson P.
    Submitted (DEC-2008) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: CM4 / NCIMB 13688.

Entry informationi

Entry nameiB7KVH3_METC4
AccessioniPrimary (citable) accession number: B7KVH3
Entry historyi
Integrated into UniProtKB/TrEMBL: February 10, 2009
Last sequence update: February 10, 2009
Last modified: May 14, 2014
This is version 33 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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