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Protein
Submitted name:

ATP dependent DNA ligase

Gene

Mchl_3561

Organism
Methylobacterium extorquens (strain CM4 / NCIMB 13688) (Methylobacterium chloromethanicum)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciMCHL440085:GCXT-3623-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Mchl_3561Imported
OrganismiMethylobacterium extorquens (strain CM4 / NCIMB 13688) (Methylobacterium chloromethanicum)Imported
Taxonomic identifieri440085 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesMethylobacteriaceaeMethylobacterium
ProteomesiUP000002385 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi440085.Mchl_3561.

Structurei

3D structure databases

ProteinModelPortaliB7KVH3.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000036007.
KOiK10747.
OMAiGQPYPFF.
OrthoDBiEOG6Q8HXT.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B7KVH3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNDFAHLLDR LAYEPRRNAK LRLLQDFFAG TPDPERGWAL AAMTGGLTFR
60 70 80 90 100
EAKPALIRGL VEERVDPVLF SLSHNYVGDL AETTALIWPG PEENPFPRMR
110 120 130 140 150
GEGALKDEAL PESPPHRGLP ARSAGDEVGR ALSPQAGRGD PPGPGHNNPP
160 170 180 190 200
PSVPTLAEVV ETLASTPKRE LPQHLAHWLD ALDETGRWAL LKLVTGNLRV
210 220 230 240 250
GVSARLAKTA VGALGGHEAD AVEEVWHGLK PPYTELFAWV EGRGERPESR
260 270 280 290 300
NPAPFRPPML SHPVEEFEDL DKLEPEAFSA EWKWDGIRVQ LAGGRDSQGR
310 320 330 340 350
QVQKVYSRTG EDISDAFPDL AEAITFDGAI DGELLILREG RVQSFNVLQQ
360 370 380 390 400
RLNRKAVTGK LLEEFPAHVR AYDVLAAEGE DLRPLPFAER RPRLETLVRR
410 420 430 440 450
LDHARIDLSP LVPFATWDEV AAARADPASA GAGADADAIE GVMLKRLNSP
460 470 480 490 500
YLPGRPKGPW WKWKREPYVV DAVMMYAQRG HGKRSSFYSD YTFGCWREGA
510 520 530 540 550
EGEELVPVGK AYHGFTDAEL QKLDRYVRNH TTKRFGPVRE VAYGREAGLV
560 570 580 590 600
LEIAFEGVQR STRHKSGVAM RFPRVSRIRW DKPAAEADRV DVLERILARG
610
EREVAPGAAM EASE
Length:614
Mass (Da):68,146
Last modified:February 10, 2009 - v1
Checksum:i243B18D62F204F2A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001298 Genomic DNA. Translation: ACK84381.1.
RefSeqiWP_015951643.1. NC_011757.1.
YP_002422309.1. NC_011757.1.

Genome annotation databases

EnsemblBacteriaiACK84381; ACK84381; Mchl_3561.
KEGGimch:Mchl_3561.
PATRICi22501404. VBIMetChl132133_3524.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001298 Genomic DNA. Translation: ACK84381.1.
RefSeqiWP_015951643.1. NC_011757.1.
YP_002422309.1. NC_011757.1.

3D structure databases

ProteinModelPortaliB7KVH3.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi440085.Mchl_3561.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACK84381; ACK84381; Mchl_3561.
KEGGimch:Mchl_3561.
PATRICi22501404. VBIMetChl132133_3524.

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000036007.
KOiK10747.
OMAiGQPYPFF.
OrthoDBiEOG6Q8HXT.

Enzyme and pathway databases

BioCyciMCHL440085:GCXT-3623-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of chromosome of Methylobacterium chloromethanicum CM4."
    US DOE Joint Genome Institute
    Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Chertkov O., Brettin T., Detter J.C., Han C., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Marx C., Richardson P.
    Submitted (NOV-2008) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: CM4 / NCIMB 13688Imported.

Entry informationi

Entry nameiB7KVH3_METC4
AccessioniPrimary (citable) accession number: B7KVH3
Entry historyi
Integrated into UniProtKB/TrEMBL: February 10, 2009
Last sequence update: February 10, 2009
Last modified: April 1, 2015
This is version 38 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.