B7KSZ9 (B7KSZ9_METC4) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Deoxyribose-phosphate aldolase EMBL ACK84029.1
EC=4.1.2.4 EMBL ACK84029.1

Gene names

Ordered Locus Names:

Mchl_3191 EMBL ACK84029.1

Organism

Methylobacterium extorquens (strain CM4 / NCIMB 13688) (Methylobacterium chloromethanicum) [Complete proteome] [HAMAP] EMBL ACK84029.1

Taxonomic identifier

440085 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Methylobacteriaceae › Methylobacterium › Methylobacterium extorquens group › Methylobacterium extorquens

Protein attributes

Sequence length	257 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5-phosphate By similarity. SAAS SAAS011343
Catalytic activity	2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. SAAS SAAS011343
Pathway	Carbohydrate degradation; 2-deoxy-D-ribose 1-phosphate degradation; D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-alpha-D-ribose 1-phosphate: step 2/2. SAAS SAAS011343
Subcellular location	Cytoplasm By similarity SAAS SAAS011343.

Ontologies

Keywords
Cellular component	Cytoplasm SAAS SAAS011343
Ligand	Schiff base SAAS SAAS011343
Molecular function	Lyase SAAS SAAS011343 EMBL ACK84029.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	deoxyribonucleotide catabolic process Inferred from electronic annotation. Source: InterPro deoxyribose phosphate catabolic process Inferred from electronic annotation. Source: UniProtKB-UniPathway
Cellular_component	cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular_function	deoxyribose-phosphate aldolase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B7KSZ9 [UniParc]. Last modified February 10, 2009. Version 1. Checksum: 339AF48824EA1FCE	FASTA	257	26,854
	10 20 30 40 50 60 MTASAPLPPQ DAVRVRADLA RRALPLLDLT DLSDACTAAA VEDLCEKARA SGVAAVCVWP 70 80 90 100 110 120 RFVADSVRGL RGSGVRVATV VNFPEGGEAV ERTVAETQAT LADGADEIDL VLPYRALMRG 130 140 150 160 170 180 DAESARAMVE AVRAACAGRL LKVILETGEL EDPDLIAQAS RLSLEAGADF IKTSTGKTTV 190 200 210 220 230 240 SATLPAAEIM LEAIRAHGGD RPVGLKVSGG LRRVEDAAAY LALADRMMGP DWVSPNTFRI 250 GASALHAELV RAGEAAR

References

[1]

"Complete sequence of chromosome of Methylobacterium chloromethanicum CM4." US DOE Joint Genome Institute Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Chertkov O., Brettin T., Detter J.C., Han C., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Marx C., Richardson P. Submitted (DEC-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: CM4 / NCIMB 13688.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001298 Genomic DNA. Translation: ACK84029.1.
RefSeq	YP_002421957.1. NC_011757.1.
3D structure databases
ProteinModelPortal	B7KSZ9.
ModBase	Search...
Protein-protein interaction databases
STRING	440085.Mchl_3191.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACK84029; ACK84029; Mchl_3191.
GeneID	7114190.
KEGG	mch:Mchl_3191.
PATRIC	22500682. VBIMetChl132133_3166.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0274.
HOGENOM	HOG000241644.
KO	K01619.
OMA	PEVRIAT.
ProtClustDB	CLSK2331439.
Enzyme and pathway databases
UniPathway	UPA00002; UER00468.
Family and domain databases
Gene3D	3.20.20.70. 1 hit.
InterPro	IPR013785. Aldolase_TIM. IPR011343. DeoC. IPR002915. DeoC/FbaB/lacD_aldolase. [Graphical view]
PANTHER	PTHR10889. PTHR10889. 1 hit.
Pfam	PF01791. DeoC. 1 hit. [Graphical view]
PIRSF	PIRSF001357. DeoC. 1 hit.
TIGRFAMs	TIGR00126. deoC. 1 hit.
ProtoNet	Search...

Entry information

Entry name

B7KSZ9_METC4

Accession

Primary (citable) accession number: B7KSZ9

Entry history

Integrated into UniProtKB/TrEMBL:	February 10, 2009
Last sequence update:	February 10, 2009
Last modified:	May 1, 2013
This is version 36 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)