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Protein

Ribosomal RNA small subunit methyltransferase B

Gene

PCC8801_0652

Organism
Cyanothece sp. (strain PCC 8801) (Synechococcus sp. (strain PCC 8801 / RF-1))
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

MethyltransferaseSAAS annotation, Transferase

Keywords - Biological processi

rRNA processingSAAS annotation

Keywords - Ligandi

RNA-bindingSAAS annotation, S-adenosyl-L-methionineSAAS annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Ribosomal RNA small subunit methyltransferase BSAAS annotation (EC:2.1.1.-SAAS annotation)
Gene namesi
Ordered Locus Names:PCC8801_0652Imported
OrganismiCyanothece sp. (strain PCC 8801) (Synechococcus sp. (strain PCC 8801 / RF-1))Imported
Taxonomic identifieri41431 [NCBI]
Taxonomic lineageiBacteriaCyanobacteriaOscillatoriophycideaeOscillatorialesCyanothecaceaeCyanothece
Proteomesi
  • UP000008204 Componenti: Chromosome

Subcellular locationi

  • Cytoplasm SAAS annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

CytoplasmSAAS annotation

Interactioni

Protein-protein interaction databases

STRINGi41431.PCC8801_0652.

Structurei

3D structure databases

ProteinModelPortaliB7JXI2.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini178 – 451SAM_MT_RSMB_NOPInterPro annotationAdd BLAST274

Sequence similaritiesi

Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.SAAS annotation

Phylogenomic databases

eggNOGiENOG4105CYJ. Bacteria.
COG0144. LUCA.
HOGENOMiHOG000037300.
KOiK03500.
OMAiHIGLYQL.
OrthoDBiPOG091H02E2.

Family and domain databases

Gene3Di1.10.940.10. 1 hit.
3.40.50.150. 1 hit.
InterProiIPR001678. MeTrfase_RsmB/NOP2.
IPR006027. NusB_RsmB_TIM44.
IPR023267. RCMT.
IPR004573. rRNA_ssu_MeTfrase_B.
IPR029063. SAM-dependent_MTases.
[Graphical view]
PfamiPF01189. Methyltr_RsmB-F. 1 hit.
PF01029. NusB. 1 hit.
[Graphical view]
PRINTSiPR02008. RCMTFAMILY.
SUPFAMiSSF48013. SSF48013. 1 hit.
SSF53335. SSF53335. 1 hit.
TIGRFAMsiTIGR00563. rsmB. 1 hit.
PROSITEiPS51686. SAM_MT_RSMB_NOP. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B7JXI2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSNSDQITHA RPLALVILRE IERRGTFTDI AIDRGLKSTD LSGSDRALVT
60 70 80 90 100
ELVYGIVRRK RTLDTLIDQL GKKASHQQPP DLRLILYIGL YQLRYLSQIP
110 120 130 140 150
PSAAVNTAVN LAKENSLQRL SGVVNGILRQ YIRLAQENND PLILPDDPIS
160 170 180 190 200
RLGVLYSFPD FMIKLWLEQW GLETTEELCN WFNQPPVLDI RINPLKTTLE
210 220 230 240 250
EVKTTLSQGN LTLMPLEIPQ GLRLQGKTGA IQDLPGFKEG WWTVQDSSAQ
260 270 280 290 300
LVSHLLDPQP SEVIIDACAA PGGKTTHIAE LMGDQGTIWA CDRYASRLKK
310 320 330 340 350
LSANKERLQL NSIKIVTGDS RQLDQFQGIA DRVLVDAPCS GLGTLHRHPD
360 370 380 390 400
IRWRQTPEKI EELAILQKEL LETTANWVKP QGILVYATCT LTYQENEGVI
410 420 430 440 450
EHFLASHPHW KIDVPSPNSP VAKWMTASGS IKILPHQQDM DGFFMVKLKK

G
Length:451
Mass (Da):50,603
Last modified:February 10, 2009 - v1
Checksum:iB04E3D9C9BDDC66C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001287 Genomic DNA. Translation: ACK64739.1.
RefSeqiWP_012594015.1. NC_011726.1.

Genome annotation databases

EnsemblBacteriaiACK64739; ACK64739; PCC8801_0652.
KEGGicyp:PCC8801_0652.
PATRICi21573504. VBICyaSp125535_0792.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001287 Genomic DNA. Translation: ACK64739.1.
RefSeqiWP_012594015.1. NC_011726.1.

3D structure databases

ProteinModelPortaliB7JXI2.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi41431.PCC8801_0652.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACK64739; ACK64739; PCC8801_0652.
KEGGicyp:PCC8801_0652.
PATRICi21573504. VBICyaSp125535_0792.

Phylogenomic databases

eggNOGiENOG4105CYJ. Bacteria.
COG0144. LUCA.
HOGENOMiHOG000037300.
KOiK03500.
OMAiHIGLYQL.
OrthoDBiPOG091H02E2.

Family and domain databases

Gene3Di1.10.940.10. 1 hit.
3.40.50.150. 1 hit.
InterProiIPR001678. MeTrfase_RsmB/NOP2.
IPR006027. NusB_RsmB_TIM44.
IPR023267. RCMT.
IPR004573. rRNA_ssu_MeTfrase_B.
IPR029063. SAM-dependent_MTases.
[Graphical view]
PfamiPF01189. Methyltr_RsmB-F. 1 hit.
PF01029. NusB. 1 hit.
[Graphical view]
PRINTSiPR02008. RCMTFAMILY.
SUPFAMiSSF48013. SSF48013. 1 hit.
SSF53335. SSF53335. 1 hit.
TIGRFAMsiTIGR00563. rsmB. 1 hit.
PROSITEiPS51686. SAM_MT_RSMB_NOP. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiB7JXI2_CYAP8
AccessioniPrimary (citable) accession number: B7JXI2
Entry historyi
Integrated into UniProtKB/TrEMBL: February 10, 2009
Last sequence update: February 10, 2009
Last modified: November 30, 2016
This is version 61 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.