Skip Header

Contribute Send feedback
Read comments (?) or add your own

B7I8N4 (B7I8N4_ACIB5) Unreviewed, UniProtKB/TrEMBL

Last modified January 25, 2012. Version 21. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesRecommended name:
Peptide deformylase 2 HAMAP MF_00163
Short name=PDF 2 HAMAP MF_00163
EC=3.5.1.88 HAMAP MF_00163
Alternative name(s):
Polypeptide deformylase 2 HAMAP MF_00163
Gene names
Name:def EMBL ACJ40828.1
Synonyms:def2 HAMAP MF_00163
Ordered Locus Names:AB57_1037
OrganismAcinetobacter baumannii (strain AB0057) [Complete proteome] [HAMAP] EMBL ACJ40828.1
Taxonomic identifier480119 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Pseudomonadales › Moraxellaceae › Acinetobacter › Acinetobacter calcoaceticus/baumannii complex

Protein attributes

Sequence length160 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions By similarity. HAMAP MF_00163

Catalytic activity

Formyl-L-methionyl peptide + H2O = formate + methionyl peptide. HAMAP MF_00163 SAAS SAAS000181

Cofactor

Binds 1 Fe2+ ion By similarity. HAMAP MF_00163

Sequence similarities

Belongs to the polypeptide deformylase family. HAMAP MF_00163

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site1461 By similarity HAMAP MF_00163
Metal binding1031Iron By similarity HAMAP MF_00163
Metal binding1451Iron By similarity HAMAP MF_00163
Metal binding1491Iron By similarity HAMAP MF_00163

Sequences

Sequence LengthMass (Da)Tools
B7I8N4 [UniParc].

Last modified February 10, 2009. Version 1.
Checksum: 740AA805DB40AF1F

FASTA16017,680
        10         20         30         40         50         60 
MSVVLPVAKR GEDILKLIAA PVSANELNSN WLYQLADAMH ATMLERNGVG IAAPQVYISK 

        70         80         90        100        110        120 
RVIIVASRPN PRYPDAPEMN AVVMVNPEIL EFSSETCLGE EGCLSVPDER GQVERAEMVK 

       130        140        150        160 
VKYLTLQGEA VETIFHGFPA RIVQHEVDHL NGILFVERIS

« Hide

References

[1]"Comparative genome sequence analysis of multidrug-resistant Acinetobacter baumannii."
Adams M.D., Goglin K., Molyneaux N., Hujer K.M., Lavender H., Jamison J.J., MacDonald I.J., Martin K.M., Russo T., Campagnari A.A., Hujer A.M., Bonomo R.A., Gill S.R.
J. Bacteriol. 190:8053-8064(2008) [PubMed: 18931120] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: AB0057 EMBL ACJ40828.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001182 Genomic DNA. Translation: ACJ40828.1.
RefSeqYP_002318427.1. NC_011586.1.

3D structure databases

ProteinModelPortalB7I8N4.
ModBaseSearch...

Protein-protein interaction databases

STRINGB7I8N4.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID7045593.
GenomeReviewsGene locus AB57_1037 in contig CP001182_GR.
KEGGabn:AB57_1037.
PATRIC20695894. VBIAciBau111166_1015.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHBG665227.
OMAYISKRII.
ProtClustDBCLSK707175.

Family and domain databases

HAMAPMF_00163. Pep_deformylase.
[Tree]
InterProIPR000181. Fmet_deformylase.
IPR023635. Peptide_deformylase.
[Graphical view]
Gene3DG3DSA:3.90.45.10. Fmet_deformylase. 1 hit.
KOK01462.
PANTHERPTHR10458. Fmet_deformylase. 1 hit.
PfamPF01327. Pep_deformylase. 1 hit.
[Graphical view]
PIRSFPIRSF004749. Pep_def. 1 hit.
PRINTSPR01576. PDEFORMYLASE.
SUPFAMSSF56420. Fmet_deformylase. 1 hit.
TIGRFAMsTIGR00079. Pept_deformyl. 1 hit.
ProtoNetSearch...

Entry information

Entry nameB7I8N4_ACIB5
AccessionPrimary (citable) accession number: B7I8N4
Entry history
Integrated into UniProtKB/TrEMBL: February 10, 2009
Last sequence update: February 10, 2009
Last modified: January 25, 2012
This is version 21 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info