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B7GBY2 (B7GBY2_PHATC) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 27. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein attributes

Sequence length426 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

Hydrolysis of an N(6)-acetyl-lysine residue of a histone to yield a deacetylated histone. PIRNR PIRNR037913

Subcellular location

Nucleus By similarity PIRNR PIRNR037913.

Sequence similarities

Belongs to the histone deacetylase family. HD Type 1 subfamily. PIRNR PIRNR037913

Sequences

Sequence LengthMass (Da)Tools
B7GBY2 [UniParc].

Last modified February 10, 2009. Version 1.
Checksum: 1EBA2C3F0676D525

FASTA42647,486
        10         20         30         40         50         60 
MTGKSRVSYF YHPTCPLFYY GPSHPMKPHR LKLAHHLILT YGLYKEMDCY RPHPAAAGEM 

        70         80         90        100        110        120 
TQFHSEDYVN FMSKVTPDNL RQYSASMQRF NAGDSTDCPV FDGLFEFTQL YTGSSLDGAL 

       130        140        150        160        170        180 
QLCQGNTDIA INWSGGLHHA KKGEASGFCY INDIVLAILE LLKVHARVLY VDIDVHHGDG 

       190        200        210        220        230        240 
VEEAFYTTDR VMTFSIHKYG DFFPGTGHIS DTGAKDGTGF SVNAPLNSGI TDETYFHDLF 

       250        260        270        280        290        300 
KPVMEKIMQV FNPGAVVLQC GADSLTGDRL GCFNLTLKGH AACVEYVKSF GVPTLVLGGG 

       310        320        330        340        350        360 
GYTIRNVARC WAYETAVLLD KKDIPNEIPY NDYYEYYAPD YELHLTPTPE ENMNGKDALE 

       370        380        390        400        410        420 
DVRTELLQQL QDLQGAPSVA MQQVPPSFQR AEATEEDPDV REGASKTRSG DGVRKQHPSE 


LYDEVD 

« Hide

References

« Hide 'large scale' references
[1]"The Phaeodactylum genome reveals the evolutionary history of diatom genomes."
Bowler C., Allen A.E., Badger J.H., Grimwood J., Jabbari K., Kuo A., Maheswari U., Martens C., Maumus F., Otillar R.P., Rayko E., Salamov A., Vandepoele K., Beszteri B., Gruber A., Heijde M., Katinka M., Mock T. expand/collapse author list , Valentin K., Verret F., Berges J.A., Brownlee C., Cadoret J.P., Chiovitti A., Choi C.J., Coesel S., De Martino A., Detter J.C., Durkin C., Falciatore A., Fournet J., Haruta M., Huysman M.J., Jenkins B.D., Jiroutova K., Jorgensen R.E., Joubert Y., Kaplan A., Kroger N., Kroth P.G., La Roche J., Lindquist E., Lommer M., Martin-Jezequel V., Lopez P.J., Lucas S., Mangogna M., McGinnis K., Medlin L.K., Montsant A., Oudot-Le Secq M.P., Napoli C., Obornik M., Parker M.S., Petit J.L., Porcel B.M., Poulsen N., Robison M., Rychlewski L., Rynearson T.A., Schmutz J., Shapiro H., Siaut M., Stanley M., Sussman M.R., Taylor A.R., Vardi A., von Dassow P., Vyverman W., Willis A., Wyrwicz L.S., Rokhsar D.S., Weissenbach J., Armbrust E.V., Green B.R., Van de Peer Y., Grigoriev I.V.
Nature 456:239-244(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: CCAP 1055/1 EMBL EEC43929.1.
[2]Diatom Consortium
Grigoriev I., Grimwood J., Kuo A., Otillar R.P., Salamov A., Detter J.C., Lindquist E., Shapiro H., Lucas S., Glavina del Rio T., Pitluck S., Rokhsar D., Bowler C.
Submitted (AUG-2008) to the EMBL/GenBank/DDBJ databases
Cited for: GENOME REANNOTATION.
Strain: CCAP 1055/1 EMBL EEC43929.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CM000626 Genomic DNA. Translation: EEC43929.1.
RefSeqXP_002184530.1. XM_002184494.1.
UniGenePtc.5458.

3D structure databases

ProteinModelPortalB7GBY2.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING2850.JGI49800.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblProtistsPhatr49800; Phatr49800; Phatr49800.
GeneID7198371.
KEGGpti:PHATRDRAFT_49800.

Phylogenomic databases

HOGENOMHOG000225180.
KOK06067.
ProtClustDBCLSN2712409.

Family and domain databases

Gene3D3.40.800.20. 1 hit.
InterProIPR000286. His_deacetylse.
IPR003084. His_deacetylse_1.
IPR023801. His_deacetylse_dom.
[Graphical view]
PANTHERPTHR10625. PTHR10625. 1 hit.
PfamPF00850. Hist_deacetyl. 1 hit.
[Graphical view]
PIRSFPIRSF037913. His_deacetylse_1. 1 hit.
PRINTSPR01270. HDASUPER.
PR01271. HISDACETLASE.
ProtoNetSearch...

Entry information

Entry nameB7GBY2_PHATC
AccessionPrimary (citable) accession number: B7GBY2
Entry history
Integrated into UniProtKB/TrEMBL: February 10, 2009
Last sequence update: February 10, 2009
Last modified: April 16, 2014
This is version 27 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)