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Protein
Submitted name:

Predicted protein

Gene

PEPCase_2

Organism
Phaeodactylum tricornutum (strain CCAP 1055/1)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Predicted proteinImported
Gene namesi
Name:PEPCase_2Imported
ORF Names:PHATRDRAFT_51136Imported
OrganismiPhaeodactylum tricornutum (strain CCAP 1055/1)Imported
Taxonomic identifieri556484 [NCBI]
Taxonomic lineageiEukaryotaStramenopilesBacillariophytaBacillariophyceaeBacillariophycidaeNaviculalesPhaeodactylaceaePhaeodactylum
ProteomesiUP000000759 Componenti: Chromosome 17

Interactioni

Protein-protein interaction databases

STRINGi2850.JGI51136.

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000238648.
InParanoidiB7G725.
KOiK01595.

Family and domain databases

HAMAPiMF_00595. PEPcase_type1.
InterProiIPR021135. PEP_COase.
IPR018129. PEP_COase_AS.
IPR022805. PEP_COase_bac/pln-type.
IPR015813. Pyrv/PenolPyrv_Kinase-like_dom.
[Graphical view]
PfamiPF00311. PEPcase. 1 hit.
[Graphical view]
PRINTSiPR00150. PEPCARBXLASE.
SUPFAMiSSF51621. SSF51621. 1 hit.
PROSITEiPS00781. PEPCASE_1. 1 hit.
PS00393. PEPCASE_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B7G725-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MIDAASKLTA TEALGVTRVF SIMLNLVNAA EVQHRNRQIR AHESTKDPSG
60 70 80 90 100
GPLPKTEDSI RGTMETLLES KQATPEEIFA QLQKQKVEIV LTAHPTQVQR
110 120 130 140 150
KSLLRKYRRV SEMLAYLERP DLDGFEKSSA QTSLQTILSS IWGADEIRRQ
160 170 180 190 200
KPTPQQEAAG GNAILESVLW DAVPAYLRKL DQQCRLTLGQ SLPVDVCPIK
210 220 230 240 250
FASWIGGDRD GNPNVTPEVT REVVLQQRLR AARLLLKDMY DLISELAISS
260 270 280 290 300
RFSPAMDALA DSVKDSQHKR EKYRRVIGHL IKRLVKTARE CELELSKLNT
310 320 330 340 350
SASMVSQTLV EEAVDGWQDV DALDDATDLI KPLRIMYDSL VETGFGLVAD
360 370 380 390 400
GLLVDIIRRL YVFGMSLVPL DIREESTKHT EALDAITRWL GIGSYSEWTE
410 420 430 440 450
EARLSWLTSE LSNKRPLYRI RELPKLGFND SVLKTLNVFG TIATLRPSCL
460 470 480 490 500
GAYVISQAQT ASDVLAVMLL QKQYGMTDKN RNMMRVVPLF ETLNDLTNAP
510 520 530 540 550
DKLEQLFSIP LYVGAVKGKQ EVMVGYSDSA KDAGRLAACW AQYNSQERMV
560 570 580 590 600
KVAAKHNIEL TFFHGKGGTV GRGGNPSVYR AIMSHPPNTI NGRFRVTEQG
610 620 630 640 650
EMITQNFGAP SIAERTLDIY TAGVCREAFS ERVEPSQAWR DQMQRISDVS
660 670 680 690 700
CAEYRHLVRE EPRFVPYFRQ ATPELELGSL NIGSRPAKRN PKGGIESLRA
710 720 730 740 750
IPWTFAWTQT RTHLSAWLGV GAGLTTTDQS ELKTLRAMYI EWPWFRETID
760 770 780 790 800
LIAMIVSKTD FSISKNYDDQ LVEKKEGLLK LGDEVREKMV QTRQAVLDVT
810 820 830 840 850
ESTDVAGAHV ALMRGSSTIR HPYVDPVNVI QAELLKRLRV MDKKKSLLAD
860 870
EMEEQEILKD ALIISINGIA QGMRNSG
Length:877
Mass (Da):98,351
Last modified:February 10, 2009 - v1
Checksum:iD37F3D64690B7E10
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CM000619 Genomic DNA. Translation: EEC45565.1.
RefSeqiXP_002182829.1. XM_002182793.1.
UniGeneiPtc.17830.

Genome annotation databases

GeneIDi7203602.
KEGGipti:PHATRDRAFT_51136.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CM000619 Genomic DNA. Translation: EEC45565.1.
RefSeqiXP_002182829.1. XM_002182793.1.
UniGeneiPtc.17830.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi2850.JGI51136.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi7203602.
KEGGipti:PHATRDRAFT_51136.

Phylogenomic databases

HOGENOMiHOG000238648.
InParanoidiB7G725.
KOiK01595.

Family and domain databases

HAMAPiMF_00595. PEPcase_type1.
InterProiIPR021135. PEP_COase.
IPR018129. PEP_COase_AS.
IPR022805. PEP_COase_bac/pln-type.
IPR015813. Pyrv/PenolPyrv_Kinase-like_dom.
[Graphical view]
PfamiPF00311. PEPcase. 1 hit.
[Graphical view]
PRINTSiPR00150. PEPCARBXLASE.
SUPFAMiSSF51621. SSF51621. 1 hit.
PROSITEiPS00781. PEPCASE_1. 1 hit.
PS00393. PEPCASE_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "The Phaeodactylum genome reveals the evolutionary history of diatom genomes."
    Bowler C., Allen A.E., Badger J.H., Grimwood J., Jabbari K., Kuo A., Maheswari U., Martens C., Maumus F., Otillar R.P., Rayko E., Salamov A., Vandepoele K., Beszteri B., Gruber A., Heijde M., Katinka M., Mock T.
    , Valentin K., Verret F., Berges J.A., Brownlee C., Cadoret J.P., Chiovitti A., Choi C.J., Coesel S., De Martino A., Detter J.C., Durkin C., Falciatore A., Fournet J., Haruta M., Huysman M.J., Jenkins B.D., Jiroutova K., Jorgensen R.E., Joubert Y., Kaplan A., Kroger N., Kroth P.G., La Roche J., Lindquist E., Lommer M., Martin-Jezequel V., Lopez P.J., Lucas S., Mangogna M., McGinnis K., Medlin L.K., Montsant A., Oudot-Le Secq M.P., Napoli C., Obornik M., Parker M.S., Petit J.L., Porcel B.M., Poulsen N., Robison M., Rychlewski L., Rynearson T.A., Schmutz J., Shapiro H., Siaut M., Stanley M., Sussman M.R., Taylor A.R., Vardi A., von Dassow P., Vyverman W., Willis A., Wyrwicz L.S., Rokhsar D.S., Weissenbach J., Armbrust E.V., Green B.R., Van de Peer Y., Grigoriev I.V.
    Nature 456:239-244(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: CCAP 1055/1Imported.
  2. Cited for: GENOME REANNOTATION.
    Strain: CCAP 1055/1Imported.

Entry informationi

Entry nameiB7G725_PHATC
AccessioniPrimary (citable) accession number: B7G725
Entry historyi
Integrated into UniProtKB/TrEMBL: February 10, 2009
Last sequence update: February 10, 2009
Last modified: March 4, 2015
This is version 32 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.