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B7FXS5 (B7FXS5_PHATC) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 29. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
ORF Names:PHATRDRAFT_45463 EMBL EEC48802.1, PHATRDRAFT_50218 EMBL EEC43238.1
OrganismPhaeodactylum tricornutum (strain CCAP 1055/1) [Reference proteome]
Taxonomic identifier556484 [NCBI]
Taxonomic lineageEukaryotaStramenopilesBacillariophytaBacillariophyceaeBacillariophycidaeNaviculalesPhaeodactylaceaePhaeodactylum

Protein attributes

Sequence length1307 AA.
Sequence statusComplete.
Protein existencePredicted

Sequences

Sequence LengthMass (Da)Tools
B7FXS5 [UniParc].

Last modified February 10, 2009. Version 1.
Checksum: A768758D16E74214

FASTA1,307148,327
        10         20         30         40         50         60 
MPNSIHLASR EDARGDQDER HYFDGPLLDI EDDEYDVEDE PLAEVDNPTT DAGPKPSYME 

        70         80         90        100        110        120 
PSYERASAVS FSRLSQQMEY LYRLKTQNVV HPPDKVSKLK RLLPPALISK ISRPTKTSDP 

       130        140        150        160        170        180 
PQSLFPILRL LLPERDGSRR IFTKENTLAK AYGRAFGLPP ASTDYQKLLY YSDPHIVGSK 

       190        200        210        220        230        240 
STGTGDFSEV LRQVLEKRIS LQKNGSGVTV GQVNALLDEL AVIGKPPTRS NHDWRNREAE 

       250        260        270        280        290        300 
LNDFQLKPKN SASKAELQAN WVTKLHCLGL TPLEHKWIIR IILERLQITL GSTVILAWYH 

       310        320        330        340        350        360 
PLAPSFWSAH NSLKAVCNKL CQPGVFELRH NLAEDGGDDD EAPSTLAPYF KSTHLTHVQL 

       370        380        390        400        410        420 
GNPFSPMASE RTGFHTVLSD MSSRHRDFTG EERCYRYEAV IRSLAFKFPT FAIETKLDGE 

       430        440        450        460        470        480 
RLLVHYFRNG TVKLHTRQGN WYSELYSPVL GPALRRAVGK HDLDLILDGE VLAWDNERHE 

       490        500        510        520        530        540 
TVPFGNNRTI AKMRYSWMRK AGILDERDIN LHNGENDVKR INSSNSWNTH NTRCDEVGEE 

       550        560        570        580        590        600 
CWLQFIAFDV LYINGPHALD FLSKTVSSFA LAKKQSGSIV DLECLERKKI LYELIDEQDN 

       610        620        630        640        650        660 
EVEIVPTVVV RPNGQTSPGH DYFRLSNPTM ECGFPARDLD SIARMFHQPK NDLGTIDAQR 

       670        680        690        700        710        720 
RHGLSDELMR KARAQAVESH YRKVVEDMRL EGLLFKDLST PYILDKISRS FGYWRKFKPD 

       730        740        750        760        770        780 
YFNGSVASDL DVVIIGAYFA SGLRLSGKPS SFLCACTDSC DSEYYFPMCK VNAGSMDRNS 

       790        800        810        820        830        840 
FSQLLYETGF RAPCDRPDPN AEESKMEYGR WFREEDHGKA LPDFITDRSH QNNSRDGRWR 

       850        860        870        880        890        900 
FRKEDYPDIW INPSDSCVLT LNAGDIVSSE AFPSGLTLRF PRIVKVRIGA DTKDPTEVES 

       910        920        930        940        950        960 
DRSLQKILQQ VLKERCESKG EANGICSTKS FTRAKAQQFC RFLTEEEYVQ GKNRKNSTGR 

       970        980        990       1000       1010       1020 
SKTLLLVPTS QQVMLSESKV LTGLSFHVLD GRYSIDSDDV AVDEATEEGW LEKALSVRSS 

      1030       1040       1050       1060       1070       1080 
NDVKHFIARH NGKVLLNPDS SMFVIGGSET DARVITYIQA INRARTSLDR RTKETDRYRR 

      1090       1100       1110       1120       1130       1140 
IAGSAGVLRW TFVFSFVQSH LGDADVSTSA LMFNPTMLDF LKRAQIEAEE LEFMADLSSK 

      1150       1160       1170       1180       1190       1200 
SSLRRALGLT SKRKRTGSDS FFLGDWRERV FSCLPTMERC ILSCRVQSVG PFKSVKADTP 

      1210       1220       1230       1240       1250       1260 
SNVIPSVVCP VTVNDDTIES VLPLARMMGA VVVREPRKDL THVVCHMIVH DIVKHKRGMS 

      1270       1280       1290       1300 
LDLFENREQG TAFKRILDDL QIKHNLSHDI LFVTPNWIRA QWPSHAR 

« Hide

References

« Hide 'large scale' references
[1]"The Phaeodactylum genome reveals the evolutionary history of diatom genomes."
Bowler C., Allen A.E., Badger J.H., Grimwood J., Jabbari K., Kuo A., Maheswari U., Martens C., Maumus F., Otillar R.P., Rayko E., Salamov A., Vandepoele K., Beszteri B., Gruber A., Heijde M., Katinka M., Mock T. expand/collapse author list , Valentin K., Verret F., Berges J.A., Brownlee C., Cadoret J.P., Chiovitti A., Choi C.J., Coesel S., De Martino A., Detter J.C., Durkin C., Falciatore A., Fournet J., Haruta M., Huysman M.J., Jenkins B.D., Jiroutova K., Jorgensen R.E., Joubert Y., Kaplan A., Kroger N., Kroth P.G., La Roche J., Lindquist E., Lommer M., Martin-Jezequel V., Lopez P.J., Lucas S., Mangogna M., McGinnis K., Medlin L.K., Montsant A., Oudot-Le Secq M.P., Napoli C., Obornik M., Parker M.S., Petit J.L., Porcel B.M., Poulsen N., Robison M., Rychlewski L., Rynearson T.A., Schmutz J., Shapiro H., Siaut M., Stanley M., Sussman M.R., Taylor A.R., Vardi A., von Dassow P., Vyverman W., Willis A., Wyrwicz L.S., Rokhsar D.S., Weissenbach J., Armbrust E.V., Green B.R., Van de Peer Y., Grigoriev I.V.
Nature 456:239-244(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: CCAP 1055/1 EMBL EEC48802.1.
[2]Diatom Consortium
Grigoriev I., Grimwood J., Kuo A., Otillar R.P., Salamov A., Detter J.C., Lindquist E., Shapiro H., Lucas S., Glavina del Rio T., Pitluck S., Rokhsar D., Bowler C.
Submitted (AUG-2008) to the EMBL/GenBank/DDBJ databases
Cited for: GENOME REANNOTATION.
Strain: CCAP 1055/1 EMBL EEC48802.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CM000630 Genomic DNA. Translation: EEC43238.1.
CM000610 Genomic DNA. Translation: EEC48802.1.
RefSeqXP_002179816.1. XM_002179780.1.
XP_002185106.1. XM_002185070.1.
UniGenePtc.410.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING2850.JGI50218.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblProtistsPhatr45463; Phatr45463; Phatr45463.
Phatr50218; Phatr50218; Phatr50218.
GeneID7199084.
7200566.
KEGGpti:PHATRDRAFT_45463.
pti:PHATRDRAFT_50218.

Phylogenomic databases

KOK10777.
ProtClustDBCLSN2710538.

Family and domain databases

Gene3D2.40.50.140. 2 hits.
InterProIPR012310. DNA_ligase_ATP-dep_cent.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB7FXS5_PHATC
AccessionPrimary (citable) accession number: B7FXS5
Entry history
Integrated into UniProtKB/TrEMBL: February 10, 2009
Last sequence update: February 10, 2009
Last modified: April 16, 2014
This is version 29 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)