B7FXS5 (B7FXS5_PHATC) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Predicted protein EMBL EEC48802.1

Gene names

ORF Names:

PHATRDRAFT_45463 EMBL EEC48802.1, PHATRDRAFT_50218 EMBL EEC43238.1

Organism

Phaeodactylum tricornutum (strain CCAP 1055/1) [Reference proteome]

Taxonomic identifier

556484 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Stramenopiles › Bacillariophyta › Bacillariophyceae › Bacillariophycidae › Naviculales › Phaeodactylaceae › Phaeodactylum › Phaeodactylum tricornutum

Protein attributes

Sequence length	1307 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	DNA recombination Inferred from electronic annotation. Source: InterPro DNA repair Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B7FXS5 [UniParc]. Last modified February 10, 2009. Version 1. Checksum: A768758D16E74214	FASTA	1,307	148,327
	10 20 30 40 50 60 MPNSIHLASR EDARGDQDER HYFDGPLLDI EDDEYDVEDE PLAEVDNPTT DAGPKPSYME 70 80 90 100 110 120 PSYERASAVS FSRLSQQMEY LYRLKTQNVV HPPDKVSKLK RLLPPALISK ISRPTKTSDP 130 140 150 160 170 180 PQSLFPILRL LLPERDGSRR IFTKENTLAK AYGRAFGLPP ASTDYQKLLY YSDPHIVGSK 190 200 210 220 230 240 STGTGDFSEV LRQVLEKRIS LQKNGSGVTV GQVNALLDEL AVIGKPPTRS NHDWRNREAE 250 260 270 280 290 300 LNDFQLKPKN SASKAELQAN WVTKLHCLGL TPLEHKWIIR IILERLQITL GSTVILAWYH 310 320 330 340 350 360 PLAPSFWSAH NSLKAVCNKL CQPGVFELRH NLAEDGGDDD EAPSTLAPYF KSTHLTHVQL 370 380 390 400 410 420 GNPFSPMASE RTGFHTVLSD MSSRHRDFTG EERCYRYEAV IRSLAFKFPT FAIETKLDGE 430 440 450 460 470 480 RLLVHYFRNG TVKLHTRQGN WYSELYSPVL GPALRRAVGK HDLDLILDGE VLAWDNERHE 490 500 510 520 530 540 TVPFGNNRTI AKMRYSWMRK AGILDERDIN LHNGENDVKR INSSNSWNTH NTRCDEVGEE 550 560 570 580 590 600 CWLQFIAFDV LYINGPHALD FLSKTVSSFA LAKKQSGSIV DLECLERKKI LYELIDEQDN 610 620 630 640 650 660 EVEIVPTVVV RPNGQTSPGH DYFRLSNPTM ECGFPARDLD SIARMFHQPK NDLGTIDAQR 670 680 690 700 710 720 RHGLSDELMR KARAQAVESH YRKVVEDMRL EGLLFKDLST PYILDKISRS FGYWRKFKPD 730 740 750 760 770 780 YFNGSVASDL DVVIIGAYFA SGLRLSGKPS SFLCACTDSC DSEYYFPMCK VNAGSMDRNS 790 800 810 820 830 840 FSQLLYETGF RAPCDRPDPN AEESKMEYGR WFREEDHGKA LPDFITDRSH QNNSRDGRWR 850 860 870 880 890 900 FRKEDYPDIW INPSDSCVLT LNAGDIVSSE AFPSGLTLRF PRIVKVRIGA DTKDPTEVES 910 920 930 940 950 960 DRSLQKILQQ VLKERCESKG EANGICSTKS FTRAKAQQFC RFLTEEEYVQ GKNRKNSTGR 970 980 990 1000 1010 1020 SKTLLLVPTS QQVMLSESKV LTGLSFHVLD GRYSIDSDDV AVDEATEEGW LEKALSVRSS 1030 1040 1050 1060 1070 1080 NDVKHFIARH NGKVLLNPDS SMFVIGGSET DARVITYIQA INRARTSLDR RTKETDRYRR 1090 1100 1110 1120 1130 1140 IAGSAGVLRW TFVFSFVQSH LGDADVSTSA LMFNPTMLDF LKRAQIEAEE LEFMADLSSK 1150 1160 1170 1180 1190 1200 SSLRRALGLT SKRKRTGSDS FFLGDWRERV FSCLPTMERC ILSCRVQSVG PFKSVKADTP 1210 1220 1230 1240 1250 1260 SNVIPSVVCP VTVNDDTIES VLPLARMMGA VVVREPRKDL THVVCHMIVH DIVKHKRGMS 1270 1280 1290 1300 LDLFENREQG TAFKRILDDL QIKHNLSHDI LFVTPNWIRA QWPSHAR

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"The Phaeodactylum genome reveals the evolutionary history of diatom genomes." Bowler C., Allen A.E., Badger J.H., Grimwood J., Jabbari K., Kuo A., Maheswari U., Martens C., Maumus F., Otillar R.P., Rayko E., Salamov A., Vandepoele K., Beszteri B., Gruber A., Heijde M., Katinka M., Mock T. , Valentin K., Verret F., Berges J.A., Brownlee C., Cadoret J.P., Chiovitti A., Choi C.J., Coesel S., De Martino A., Detter J.C., Durkin C., Falciatore A., Fournet J., Haruta M., Huysman M.J., Jenkins B.D., Jiroutova K., Jorgensen R.E., Joubert Y., Kaplan A., Kroger N., Kroth P.G., La Roche J., Lindquist E., Lommer M., Martin-Jezequel V., Lopez P.J., Lucas S., Mangogna M., McGinnis K., Medlin L.K., Montsant A., Oudot-Le Secq M.P., Napoli C., Obornik M., Parker M.S., Petit J.L., Porcel B.M., Poulsen N., Robison M., Rychlewski L., Rynearson T.A., Schmutz J., Shapiro H., Siaut M., Stanley M., Sussman M.R., Taylor A.R., Vardi A., von Dassow P., Vyverman W., Willis A., Wyrwicz L.S., Rokhsar D.S., Weissenbach J., Armbrust E.V., Green B.R., Van de Peer Y., Grigoriev I.V. Nature 456:239-244(2008) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: CCAP 1055/1 EMBL EEC48802.1.
[2]	Diatom Consortium Grigoriev I., Grimwood J., Kuo A., Otillar R.P., Salamov A., Detter J.C., Lindquist E., Shapiro H., Lucas S., Glavina del Rio T., Pitluck S., Rokhsar D., Bowler C. Submitted (AUG-2008) to the EMBL/GenBank/DDBJ databases Cited for: GENOME REANNOTATION. Strain: CCAP 1055/1 EMBL EEC48802.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CM000630 Genomic DNA. Translation: EEC43238.1. CM000610 Genomic DNA. Translation: EEC48802.1.
RefSeq	XP_002179816.1. XM_002179780.1. XP_002185106.1. XM_002185070.1.
UniGene	Ptc.410.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblProtists	Phatr45463; Phatr45463; Phatr45463. Phatr50218; Phatr50218; Phatr50218.
GeneID	7199084. 7200566.
KEGG	pti:PHATRDRAFT_45463. pti:PHATRDRAFT_50218.
Phylogenomic databases
KO	K10777.
ProtClustDB	CLSN2710538.
Family and domain databases
Gene3D	2.40.50.140. 2 hits.
InterPro	IPR012310. DNA_ligase_ATP-dep_cent. IPR012308. DNA_ligase_ATP-dep_N. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF01068. DNA_ligase_A_M. 1 hit. PF04675. DNA_ligase_A_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
PROSITE	PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B7FXS5_PHATC

Accession

Primary (citable) accession number: B7FXS5

Entry history

Integrated into UniProtKB/TrEMBL:	February 10, 2009
Last sequence update:	February 10, 2009
Last modified:	March 6, 2013
This is version 24 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)