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Protein
Submitted name:

Predicted protein

Gene

PHATRDRAFT_45463

Organism
Phaeodactylum tricornutum (strain CCAP 1055/1)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Predicted proteinImported
Gene namesi
ORF Names:PHATRDRAFT_45463Imported, PHATRDRAFT_50218Imported
OrganismiPhaeodactylum tricornutum (strain CCAP 1055/1)Imported
Taxonomic identifieri556484 [NCBI]
Taxonomic lineageiEukaryotaStramenopilesBacillariophytaBacillariophyceaeBacillariophycidaeNaviculalesPhaeodactylaceaePhaeodactylum
ProteomesiUP000000759: Chromosome 28, UP000000759: Chromosome 7

Interactioni

Protein-protein interaction databases

STRINGi2850.JGI50218.

Family & Domainsi

Phylogenomic databases

InParanoidiB7FXS5.
KOiK10777.

Family and domain databases

Gene3Di2.40.50.140. 2 hits.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR012308. DNA_ligase_ATP-dep_N.
IPR029710. LIG4.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PANTHERiPTHR10459:SF7. PTHR10459:SF7. 1 hit.
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B7FXS5-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MPNSIHLASR EDARGDQDER HYFDGPLLDI EDDEYDVEDE PLAEVDNPTT
60 70 80 90 100
DAGPKPSYME PSYERASAVS FSRLSQQMEY LYRLKTQNVV HPPDKVSKLK
110 120 130 140 150
RLLPPALISK ISRPTKTSDP PQSLFPILRL LLPERDGSRR IFTKENTLAK
160 170 180 190 200
AYGRAFGLPP ASTDYQKLLY YSDPHIVGSK STGTGDFSEV LRQVLEKRIS
210 220 230 240 250
LQKNGSGVTV GQVNALLDEL AVIGKPPTRS NHDWRNREAE LNDFQLKPKN
260 270 280 290 300
SASKAELQAN WVTKLHCLGL TPLEHKWIIR IILERLQITL GSTVILAWYH
310 320 330 340 350
PLAPSFWSAH NSLKAVCNKL CQPGVFELRH NLAEDGGDDD EAPSTLAPYF
360 370 380 390 400
KSTHLTHVQL GNPFSPMASE RTGFHTVLSD MSSRHRDFTG EERCYRYEAV
410 420 430 440 450
IRSLAFKFPT FAIETKLDGE RLLVHYFRNG TVKLHTRQGN WYSELYSPVL
460 470 480 490 500
GPALRRAVGK HDLDLILDGE VLAWDNERHE TVPFGNNRTI AKMRYSWMRK
510 520 530 540 550
AGILDERDIN LHNGENDVKR INSSNSWNTH NTRCDEVGEE CWLQFIAFDV
560 570 580 590 600
LYINGPHALD FLSKTVSSFA LAKKQSGSIV DLECLERKKI LYELIDEQDN
610 620 630 640 650
EVEIVPTVVV RPNGQTSPGH DYFRLSNPTM ECGFPARDLD SIARMFHQPK
660 670 680 690 700
NDLGTIDAQR RHGLSDELMR KARAQAVESH YRKVVEDMRL EGLLFKDLST
710 720 730 740 750
PYILDKISRS FGYWRKFKPD YFNGSVASDL DVVIIGAYFA SGLRLSGKPS
760 770 780 790 800
SFLCACTDSC DSEYYFPMCK VNAGSMDRNS FSQLLYETGF RAPCDRPDPN
810 820 830 840 850
AEESKMEYGR WFREEDHGKA LPDFITDRSH QNNSRDGRWR FRKEDYPDIW
860 870 880 890 900
INPSDSCVLT LNAGDIVSSE AFPSGLTLRF PRIVKVRIGA DTKDPTEVES
910 920 930 940 950
DRSLQKILQQ VLKERCESKG EANGICSTKS FTRAKAQQFC RFLTEEEYVQ
960 970 980 990 1000
GKNRKNSTGR SKTLLLVPTS QQVMLSESKV LTGLSFHVLD GRYSIDSDDV
1010 1020 1030 1040 1050
AVDEATEEGW LEKALSVRSS NDVKHFIARH NGKVLLNPDS SMFVIGGSET
1060 1070 1080 1090 1100
DARVITYIQA INRARTSLDR RTKETDRYRR IAGSAGVLRW TFVFSFVQSH
1110 1120 1130 1140 1150
LGDADVSTSA LMFNPTMLDF LKRAQIEAEE LEFMADLSSK SSLRRALGLT
1160 1170 1180 1190 1200
SKRKRTGSDS FFLGDWRERV FSCLPTMERC ILSCRVQSVG PFKSVKADTP
1210 1220 1230 1240 1250
SNVIPSVVCP VTVNDDTIES VLPLARMMGA VVVREPRKDL THVVCHMIVH
1260 1270 1280 1290 1300
DIVKHKRGMS LDLFENREQG TAFKRILDDL QIKHNLSHDI LFVTPNWIRA

QWPSHAR
Length:1,307
Mass (Da):148,327
Last modified:February 10, 2009 - v1
Checksum:iA768758D16E74214
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CM000630 Genomic DNA. Translation: EEC43238.1.
CM000610 Genomic DNA. Translation: EEC48802.1.
RefSeqiXP_002179816.1. XM_002179780.1.
XP_002185106.1. XM_002185070.1.
UniGeneiPtc.410.

Genome annotation databases

EnsemblProtistsiPhatr45463; Phatr45463; Phatr45463.
Phatr50218; Phatr50218; Phatr50218.
GeneIDi7199084.
7200566.
KEGGipti:PHATRDRAFT_45463.
pti:PHATRDRAFT_50218.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CM000630 Genomic DNA. Translation: EEC43238.1.
CM000610 Genomic DNA. Translation: EEC48802.1.
RefSeqiXP_002179816.1. XM_002179780.1.
XP_002185106.1. XM_002185070.1.
UniGeneiPtc.410.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi2850.JGI50218.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblProtistsiPhatr45463; Phatr45463; Phatr45463.
Phatr50218; Phatr50218; Phatr50218.
GeneIDi7199084.
7200566.
KEGGipti:PHATRDRAFT_45463.
pti:PHATRDRAFT_50218.

Phylogenomic databases

InParanoidiB7FXS5.
KOiK10777.

Family and domain databases

Gene3Di2.40.50.140. 2 hits.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR012308. DNA_ligase_ATP-dep_N.
IPR029710. LIG4.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PANTHERiPTHR10459:SF7. PTHR10459:SF7. 1 hit.
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "The Phaeodactylum genome reveals the evolutionary history of diatom genomes."
    Bowler C., Allen A.E., Badger J.H., Grimwood J., Jabbari K., Kuo A., Maheswari U., Martens C., Maumus F., Otillar R.P., Rayko E., Salamov A., Vandepoele K., Beszteri B., Gruber A., Heijde M., Katinka M., Mock T.
    , Valentin K., Verret F., Berges J.A., Brownlee C., Cadoret J.P., Chiovitti A., Choi C.J., Coesel S., De Martino A., Detter J.C., Durkin C., Falciatore A., Fournet J., Haruta M., Huysman M.J., Jenkins B.D., Jiroutova K., Jorgensen R.E., Joubert Y., Kaplan A., Kroger N., Kroth P.G., La Roche J., Lindquist E., Lommer M., Martin-Jezequel V., Lopez P.J., Lucas S., Mangogna M., McGinnis K., Medlin L.K., Montsant A., Oudot-Le Secq M.P., Napoli C., Obornik M., Parker M.S., Petit J.L., Porcel B.M., Poulsen N., Robison M., Rychlewski L., Rynearson T.A., Schmutz J., Shapiro H., Siaut M., Stanley M., Sussman M.R., Taylor A.R., Vardi A., von Dassow P., Vyverman W., Willis A., Wyrwicz L.S., Rokhsar D.S., Weissenbach J., Armbrust E.V., Green B.R., Van de Peer Y., Grigoriev I.V.
    Nature 456:239-244(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: CCAP 1055/1Imported.
  2. Cited for: GENOME REANNOTATION.
    Strain: CCAP 1055/1Imported.

Entry informationi

Entry nameiB7FXS5_PHATC
AccessioniPrimary (citable) accession number: B7FXS5
Entry historyi
Integrated into UniProtKB/TrEMBL: February 10, 2009
Last sequence update: February 10, 2009
Last modified: November 26, 2014
This is version 33 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.