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B7FXS5

- B7FXS5_PHATC

UniProt

B7FXS5 - B7FXS5_PHATC

Protein
Submitted name:

Predicted protein

Gene

PHATRDRAFT_45463

Organism
Phaeodactylum tricornutum (strain CCAP 1055/1)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 31 (01 Oct 2014)
      Sequence version 1 (10 Feb 2009)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA binding Source: InterPro
    3. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Predicted proteinImported
    Gene namesi
    ORF Names:PHATRDRAFT_45463Imported, PHATRDRAFT_50218Imported
    OrganismiPhaeodactylum tricornutum (strain CCAP 1055/1)Imported
    Taxonomic identifieri556484 [NCBI]
    Taxonomic lineageiEukaryotaStramenopilesBacillariophytaBacillariophyceaeBacillariophycidaeNaviculalesPhaeodactylaceaePhaeodactylum
    ProteomesiUP000000759: Chromosome 28, UP000000759: Chromosome 7

    Interactioni

    Protein-protein interaction databases

    STRINGi2850.JGI50218.

    Family & Domainsi

    Phylogenomic databases

    KOiK10777.

    Family and domain databases

    Gene3Di2.40.50.140. 2 hits.
    InterProiIPR012310. DNA_ligase_ATP-dep_cent.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    B7FXS5-1 [UniParc]FASTAAdd to Basket

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    MPNSIHLASR EDARGDQDER HYFDGPLLDI EDDEYDVEDE PLAEVDNPTT     50
    DAGPKPSYME PSYERASAVS FSRLSQQMEY LYRLKTQNVV HPPDKVSKLK 100
    RLLPPALISK ISRPTKTSDP PQSLFPILRL LLPERDGSRR IFTKENTLAK 150
    AYGRAFGLPP ASTDYQKLLY YSDPHIVGSK STGTGDFSEV LRQVLEKRIS 200
    LQKNGSGVTV GQVNALLDEL AVIGKPPTRS NHDWRNREAE LNDFQLKPKN 250
    SASKAELQAN WVTKLHCLGL TPLEHKWIIR IILERLQITL GSTVILAWYH 300
    PLAPSFWSAH NSLKAVCNKL CQPGVFELRH NLAEDGGDDD EAPSTLAPYF 350
    KSTHLTHVQL GNPFSPMASE RTGFHTVLSD MSSRHRDFTG EERCYRYEAV 400
    IRSLAFKFPT FAIETKLDGE RLLVHYFRNG TVKLHTRQGN WYSELYSPVL 450
    GPALRRAVGK HDLDLILDGE VLAWDNERHE TVPFGNNRTI AKMRYSWMRK 500
    AGILDERDIN LHNGENDVKR INSSNSWNTH NTRCDEVGEE CWLQFIAFDV 550
    LYINGPHALD FLSKTVSSFA LAKKQSGSIV DLECLERKKI LYELIDEQDN 600
    EVEIVPTVVV RPNGQTSPGH DYFRLSNPTM ECGFPARDLD SIARMFHQPK 650
    NDLGTIDAQR RHGLSDELMR KARAQAVESH YRKVVEDMRL EGLLFKDLST 700
    PYILDKISRS FGYWRKFKPD YFNGSVASDL DVVIIGAYFA SGLRLSGKPS 750
    SFLCACTDSC DSEYYFPMCK VNAGSMDRNS FSQLLYETGF RAPCDRPDPN 800
    AEESKMEYGR WFREEDHGKA LPDFITDRSH QNNSRDGRWR FRKEDYPDIW 850
    INPSDSCVLT LNAGDIVSSE AFPSGLTLRF PRIVKVRIGA DTKDPTEVES 900
    DRSLQKILQQ VLKERCESKG EANGICSTKS FTRAKAQQFC RFLTEEEYVQ 950
    GKNRKNSTGR SKTLLLVPTS QQVMLSESKV LTGLSFHVLD GRYSIDSDDV 1000
    AVDEATEEGW LEKALSVRSS NDVKHFIARH NGKVLLNPDS SMFVIGGSET 1050
    DARVITYIQA INRARTSLDR RTKETDRYRR IAGSAGVLRW TFVFSFVQSH 1100
    LGDADVSTSA LMFNPTMLDF LKRAQIEAEE LEFMADLSSK SSLRRALGLT 1150
    SKRKRTGSDS FFLGDWRERV FSCLPTMERC ILSCRVQSVG PFKSVKADTP 1200
    SNVIPSVVCP VTVNDDTIES VLPLARMMGA VVVREPRKDL THVVCHMIVH 1250
    DIVKHKRGMS LDLFENREQG TAFKRILDDL QIKHNLSHDI LFVTPNWIRA 1300
    QWPSHAR 1307
    Length:1,307
    Mass (Da):148,327
    Last modified:February 10, 2009 - v1
    Checksum:iA768758D16E74214
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CM000630 Genomic DNA. Translation: EEC43238.1.
    CM000610 Genomic DNA. Translation: EEC48802.1.
    RefSeqiXP_002179816.1. XM_002179780.1.
    XP_002185106.1. XM_002185070.1.
    UniGeneiPtc.410.

    Genome annotation databases

    EnsemblProtistsiPhatr45463; Phatr45463; Phatr45463.
    Phatr50218; Phatr50218; Phatr50218.
    GeneIDi7199084.
    7200566.
    KEGGipti:PHATRDRAFT_45463.
    pti:PHATRDRAFT_50218.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CM000630 Genomic DNA. Translation: EEC43238.1 .
    CM000610 Genomic DNA. Translation: EEC48802.1 .
    RefSeqi XP_002179816.1. XM_002179780.1.
    XP_002185106.1. XM_002185070.1.
    UniGenei Ptc.410.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 2850.JGI50218.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblProtistsi Phatr45463 ; Phatr45463 ; Phatr45463 .
    Phatr50218 ; Phatr50218 ; Phatr50218 .
    GeneIDi 7199084.
    7200566.
    KEGGi pti:PHATRDRAFT_45463.
    pti:PHATRDRAFT_50218.

    Phylogenomic databases

    KOi K10777.

    Family and domain databases

    Gene3Di 2.40.50.140. 2 hits.
    InterProi IPR012310. DNA_ligase_ATP-dep_cent.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The Phaeodactylum genome reveals the evolutionary history of diatom genomes."
      Bowler C., Allen A.E., Badger J.H., Grimwood J., Jabbari K., Kuo A., Maheswari U., Martens C., Maumus F., Otillar R.P., Rayko E., Salamov A., Vandepoele K., Beszteri B., Gruber A., Heijde M., Katinka M., Mock T.
      , Valentin K., Verret F., Berges J.A., Brownlee C., Cadoret J.P., Chiovitti A., Choi C.J., Coesel S., De Martino A., Detter J.C., Durkin C., Falciatore A., Fournet J., Haruta M., Huysman M.J., Jenkins B.D., Jiroutova K., Jorgensen R.E., Joubert Y., Kaplan A., Kroger N., Kroth P.G., La Roche J., Lindquist E., Lommer M., Martin-Jezequel V., Lopez P.J., Lucas S., Mangogna M., McGinnis K., Medlin L.K., Montsant A., Oudot-Le Secq M.P., Napoli C., Obornik M., Parker M.S., Petit J.L., Porcel B.M., Poulsen N., Robison M., Rychlewski L., Rynearson T.A., Schmutz J., Shapiro H., Siaut M., Stanley M., Sussman M.R., Taylor A.R., Vardi A., von Dassow P., Vyverman W., Willis A., Wyrwicz L.S., Rokhsar D.S., Weissenbach J., Armbrust E.V., Green B.R., Van de Peer Y., Grigoriev I.V.
      Nature 456:239-244(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: CCAP 1055/1Imported.
    2. Cited for: GENOME REANNOTATION.
      Strain: CCAP 1055/1Imported.

    Entry informationi

    Entry nameiB7FXS5_PHATC
    AccessioniPrimary (citable) accession number: B7FXS5
    Entry historyi
    Integrated into UniProtKB/TrEMBL: February 10, 2009
    Last sequence update: February 10, 2009
    Last modified: October 1, 2014
    This is version 31 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3