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Protein
Submitted name:

Predicted protein

Gene

PHATRDRAFT_34010

Organism
Phaeodactylum tricornutum (strain CCAP 1055/1)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. catalytic activity Source: InterPro
  2. pyridoxal phosphate binding Source: InterPro

GO - Biological processi

  1. biosynthetic process Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Predicted proteinImported
Gene namesi
ORF Names:PHATRDRAFT_34010Imported
OrganismiPhaeodactylum tricornutum (strain CCAP 1055/1)Imported
Taxonomic identifieri556484 [NCBI]
Taxonomic lineageiEukaryotaStramenopilesBacillariophytaBacillariophyceaeBacillariophycidaeNaviculalesPhaeodactylaceaePhaeodactylum
ProteomesiUP000000759: Chromosome 4

Interactioni

Protein-protein interaction databases

STRINGi2850.JGI34010.

Structurei

3D structure databases

ProteinModelPortaliB7FUH0.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000215020.
InParanoidiB7FUH0.
KOiK00814.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProiIPR004839. Aminotransferase_I/II.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamiPF00155. Aminotran_1_2. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.

Sequencei

Sequence statusi: Complete.

B7FUH0-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MYPGLRKMEY AVRGKVVIAA DQISDNLASG KSYPFDHIVY TNIGNPQSVG
60 70 80 90 100
QQPLTWPRQV LALVDLPDAV GIQHPDILRL FPADAVARAK EIKEGLGGHG
110 120 130 140 150
SGAYSHSKGC RAFRRDIAAF LQDRDGGLPA EPEDIFMTNG ASAGINMMLN
160 170 180 190 200
ALVADSSCGV MIPIPQYPIY SATIDLLGGQ KVGYYLNEAN GWELNMEELE
210 220 230 240 250
RSLQEATEQG IKVNAFVLIN PGNPSGTVLS RTNLQDIVRF CAKHNLVLLA
260 270 280 290 300
DEVYQENVYD ENAEFVSCKR AAHQVGLLED DGIELVSFHS ISKGVFGECG
310 320 330 340 350
RRGGYMELVG FNADVKDELY KLASANLCAT VSGQIMTSLM VRGPDQGDVS
360 370 380 390 400
YESHQAEKKA IFESLRRRSK IVSDGLNNIP GISCQTATGS MYCFPSVEMP
410 420 430 440 450
KGALPAAEKM GVSPDTLYCM SLLERTGLCV VPASGFGQRE GRYGFRTTFL
460 470
PSEDEMARAV EQIREHYHEF CEMYA
Length:475
Mass (Da):51,937
Last modified:February 10, 2009 - v1
Checksum:i578A301D8C2712AD
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CM000607 Genomic DNA. Translation: EEC50258.1.
RefSeqiXP_002178593.1. XM_002178557.1.
UniGeneiPtc.1179.

Genome annotation databases

EnsemblProtistsiPhatr34010; Phatr34010; Phatr34010.
GeneIDi7197795.
KEGGipti:PHATRDRAFT_34010.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CM000607 Genomic DNA. Translation: EEC50258.1.
RefSeqiXP_002178593.1. XM_002178557.1.
UniGeneiPtc.1179.

3D structure databases

ProteinModelPortaliB7FUH0.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi2850.JGI34010.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblProtistsiPhatr34010; Phatr34010; Phatr34010.
GeneIDi7197795.
KEGGipti:PHATRDRAFT_34010.

Phylogenomic databases

HOGENOMiHOG000215020.
InParanoidiB7FUH0.
KOiK00814.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProiIPR004839. Aminotransferase_I/II.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamiPF00155. Aminotran_1_2. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "The Phaeodactylum genome reveals the evolutionary history of diatom genomes."
    Bowler C., Allen A.E., Badger J.H., Grimwood J., Jabbari K., Kuo A., Maheswari U., Martens C., Maumus F., Otillar R.P., Rayko E., Salamov A., Vandepoele K., Beszteri B., Gruber A., Heijde M., Katinka M., Mock T.
    , Valentin K., Verret F., Berges J.A., Brownlee C., Cadoret J.P., Chiovitti A., Choi C.J., Coesel S., De Martino A., Detter J.C., Durkin C., Falciatore A., Fournet J., Haruta M., Huysman M.J., Jenkins B.D., Jiroutova K., Jorgensen R.E., Joubert Y., Kaplan A., Kroger N., Kroth P.G., La Roche J., Lindquist E., Lommer M., Martin-Jezequel V., Lopez P.J., Lucas S., Mangogna M., McGinnis K., Medlin L.K., Montsant A., Oudot-Le Secq M.P., Napoli C., Obornik M., Parker M.S., Petit J.L., Porcel B.M., Poulsen N., Robison M., Rychlewski L., Rynearson T.A., Schmutz J., Shapiro H., Siaut M., Stanley M., Sussman M.R., Taylor A.R., Vardi A., von Dassow P., Vyverman W., Willis A., Wyrwicz L.S., Rokhsar D.S., Weissenbach J., Armbrust E.V., Green B.R., Van de Peer Y., Grigoriev I.V.
    Nature 456:239-244(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: CCAP 1055/1Imported.
  2. Cited for: GENOME REANNOTATION.
    Strain: CCAP 1055/1Imported.

Entry informationi

Entry nameiB7FUH0_PHATC
AccessioniPrimary (citable) accession number: B7FUH0
Entry historyi
Integrated into UniProtKB/TrEMBL: February 10, 2009
Last sequence update: February 10, 2009
Last modified: January 7, 2015
This is version 30 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.