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B7FPQ3

- B7FPQ3_PHATC

UniProt

B7FPQ3 - B7FPQ3_PHATC

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Protein

Superoxide dismutase

Gene

SOD2

Organism
Phaeodactylum tricornutum (strain CCAP 1055/1)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Destroys radicals which are normally produced within the cells and which are toxic to biological systems.UniRule annotation

Catalytic activityi

2 superoxide + 2 H+ = O2 + H2O2.UniRule annotation

GO - Molecular functioni

  1. metal ion binding Source: InterPro
  2. superoxide dismutase activity Source: UniProtKB-EC
Complete GO annotation...

Keywords - Molecular functioni

OxidoreductaseUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Superoxide dismutaseUniRule annotation (EC:1.15.1.1UniRule annotation)
Gene namesi
Name:SOD2Imported
ORF Names:PHATRDRAFT_42832Imported
OrganismiPhaeodactylum tricornutum (strain CCAP 1055/1)Imported
Taxonomic identifieri556484 [NCBI]
Taxonomic lineageiEukaryotaStramenopilesBacillariophytaBacillariophyceaeBacillariophycidaeNaviculalesPhaeodactylaceaePhaeodactylum
ProteomesiUP000000759: Unassembled WGS sequence

Interactioni

Protein-protein interaction databases

STRINGi2850.JGI42832.

Structurei

3D structure databases

ProteinModelPortaliB7FPQ3.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the iron/manganese superoxide dismutase family.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000013583.
InParanoidiB7FPQ3.
KOiK04564.

Family and domain databases

InterProiIPR001189. Mn/Fe_SOD.
IPR019833. Mn/Fe_SOD_BS.
IPR019832. Mn/Fe_SOD_C.
IPR019831. Mn/Fe_SOD_N.
[Graphical view]
PANTHERiPTHR11404. PTHR11404. 1 hit.
PfamiPF02777. Sod_Fe_C. 1 hit.
PF00081. Sod_Fe_N. 1 hit.
[Graphical view]
PIRSFiPIRSF000349. SODismutase. 1 hit.
PRINTSiPR01703. MNSODISMTASE.
SUPFAMiSSF46609. SSF46609. 1 hit.
SSF54719. SSF54719. 1 hit.
PROSITEiPS00088. SOD_MN. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B7FPQ3-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MSGSKIIVDS ALRAAVNLRS SKIPTELAKS SAALFSAYGG AKKHELPTLT
60 70 80 90 100
YDYASLEPAI SAETMELHHS KHHNTYVTNL NVTLEKMDSA LTSSDISALI
110 120 130 140 150
GLQGALKFNG GGHLNHTLFW DLESAIKESF GDFEKLKTEM SAKTVAVQGS
160 170 180 190 200
GWGWLGYNKS TGRLEIATCA NQDPLEATTG LAPLLGIDVW EHAYYVDYRN
210 220
VRPDYVKNIW DIINWDTVAQ RLSATK
Length:226
Mass (Da):24,778
Last modified:February 10, 2009 - v1
Checksum:i0C6BC265970545E2
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CM000605 Genomic DNA. Translation: EEC51716.1.
RefSeqiXP_002177253.1. XM_002177217.1.
UniGeneiPtc.3632.

Genome annotation databases

EnsemblProtistsiPhatr42832; Phatr42832; Phatr42832.
GeneIDi7196432.
KEGGipti:PHATRDRAFT_42832.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CM000605 Genomic DNA. Translation: EEC51716.1 .
RefSeqi XP_002177253.1. XM_002177217.1.
UniGenei Ptc.3632.

3D structure databases

ProteinModelPortali B7FPQ3.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 2850.JGI42832.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblProtistsi Phatr42832 ; Phatr42832 ; Phatr42832 .
GeneIDi 7196432.
KEGGi pti:PHATRDRAFT_42832.

Phylogenomic databases

HOGENOMi HOG000013583.
InParanoidi B7FPQ3.
KOi K04564.

Family and domain databases

InterProi IPR001189. Mn/Fe_SOD.
IPR019833. Mn/Fe_SOD_BS.
IPR019832. Mn/Fe_SOD_C.
IPR019831. Mn/Fe_SOD_N.
[Graphical view ]
PANTHERi PTHR11404. PTHR11404. 1 hit.
Pfami PF02777. Sod_Fe_C. 1 hit.
PF00081. Sod_Fe_N. 1 hit.
[Graphical view ]
PIRSFi PIRSF000349. SODismutase. 1 hit.
PRINTSi PR01703. MNSODISMTASE.
SUPFAMi SSF46609. SSF46609. 1 hit.
SSF54719. SSF54719. 1 hit.
PROSITEi PS00088. SOD_MN. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "The Phaeodactylum genome reveals the evolutionary history of diatom genomes."
    Bowler C., Allen A.E., Badger J.H., Grimwood J., Jabbari K., Kuo A., Maheswari U., Martens C., Maumus F., Otillar R.P., Rayko E., Salamov A., Vandepoele K., Beszteri B., Gruber A., Heijde M., Katinka M., Mock T.
    , Valentin K., Verret F., Berges J.A., Brownlee C., Cadoret J.P., Chiovitti A., Choi C.J., Coesel S., De Martino A., Detter J.C., Durkin C., Falciatore A., Fournet J., Haruta M., Huysman M.J., Jenkins B.D., Jiroutova K., Jorgensen R.E., Joubert Y., Kaplan A., Kroger N., Kroth P.G., La Roche J., Lindquist E., Lommer M., Martin-Jezequel V., Lopez P.J., Lucas S., Mangogna M., McGinnis K., Medlin L.K., Montsant A., Oudot-Le Secq M.P., Napoli C., Obornik M., Parker M.S., Petit J.L., Porcel B.M., Poulsen N., Robison M., Rychlewski L., Rynearson T.A., Schmutz J., Shapiro H., Siaut M., Stanley M., Sussman M.R., Taylor A.R., Vardi A., von Dassow P., Vyverman W., Willis A., Wyrwicz L.S., Rokhsar D.S., Weissenbach J., Armbrust E.V., Green B.R., Van de Peer Y., Grigoriev I.V.
    Nature 456:239-244(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: CCAP 1055/1Imported.
  2. Cited for: GENOME REANNOTATION.
    Strain: CCAP 1055/1Imported.

Entry informationi

Entry nameiB7FPQ3_PHATC
AccessioniPrimary (citable) accession number: B7FPQ3
Entry historyi
Integrated into UniProtKB/TrEMBL: February 10, 2009
Last sequence update: February 10, 2009
Last modified: October 29, 2014
This is version 28 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3