Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

C3H transcription factor

Gene
N/A
Organism
Oryza sativa subsp. japonica (Rice)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri117 – 143C3H1-typePROSITE-ProRule annotationAdd BLAST27
Zinc fingeri151 – 175C3H1-typePROSITE-ProRule annotationAdd BLAST25

GO - Molecular functioni

Keywordsi

LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Submitted name:
C3H transcription factorImported
Submitted name:
cDNA clone:J023119N23, full insert sequenceImported
OrganismiOryza sativa subsp. japonica (Rice)Imported
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryzaOryza sativa

Structurei

3D structure databases

SMRiB7EQW0.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini117 – 143C3H1-typeInterPro annotationAdd BLAST27
Domaini151 – 175C3H1-typeInterPro annotationAdd BLAST25

Zinc finger

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri117 – 143C3H1-typePROSITE-ProRule annotationAdd BLAST27
Zinc fingeri151 – 175C3H1-typePROSITE-ProRule annotationAdd BLAST25

Keywords - Domaini

Zinc-fingerPROSITE-ProRule annotationSAAS annotation

Phylogenomic databases

eggNOGiKOG1595. Eukaryota.
ENOG410XR0Z. LUCA.
OMAiWSYPASS.
OrthoDBiEOG09360F3R.

Family and domain databases

Gene3Di4.10.1000.10. 2 hits.
InterProiView protein in InterPro
IPR000571. Znf_CCCH.
IPR036855. Znf_CCCH_sf.
PfamiView protein in Pfam
PF00642. zf-CCCH. 1 hit.
SMARTiView protein in SMART
SM00356. ZnF_C3H1. 2 hits.
PROSITEiView protein in PROSITE
PS50103. ZF_C3H1. 2 hits.

Sequencei

Sequence statusi: Complete.

B7EQW0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MMMMGEGVSS VPPWSHLPVS GVDVLGGGGG GGDEMTPYVI AALRDYLPAN
60 70 80 90 100
DVGVGADEEE EAAAMAAAVD AYACDEFRMY EFKVRRCARG RSHDWTECPF
110 120 130 140 150
AHPGEKARRR DPRKYHYSGT ACPDFRKGGC KRGDACEYAH GVFECWLHPA
160 170 180 190 200
RYRTQPCKDG TACRRRVCFF AHTPDQLRVL PAQQSSPRSV ASSPLAESYD
210 220 230 240 250
GSPLRRQAFE SYLTKTIMSS SPTSTLMSPP KSPPSESPPL SPDGAAAIRR
260 270 280 290 300
GSWPGVGSPV NDVLASFRQL RLNKVKSSPS GGWSYPSSSA VYGSPKAATG
310 320 330 340 350
LYSLPTTPLA STATVTTASS FMPNLEPLDL GLIGDEEPVQ RVESGRALRE
360 370 380
KVFERLSRDG AISGDATAFA TAGVGLDVDW VSDLIN
Length:386
Mass (Da):41,423
Last modified:February 10, 2009 - v1
Checksum:i0244BD287AA5A4C2
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Non-terminal residuei386Imported1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
HQ858837 mRNA. Translation: ADX60249.1.
AK100770 mRNA. Translation: BAG94757.1.
RefSeqiXP_015621800.1. XM_015766314.1.
UniGeneiOs.20244.

Genome annotation databases

EnsemblPlantsiOS01T0192000-01; OS01T0192000-01; OS01G0192000.
GeneIDi4327304.
GrameneiOS01T0192000-01; OS01T0192000-01; OS01G0192000.
KEGGiosa:4327304.

Similar proteinsi

Entry informationi

Entry nameiB7EQW0_ORYSJ
AccessioniPrimary (citable) accession number: B7EQW0
Entry historyiIntegrated into UniProtKB/TrEMBL: February 10, 2009
Last sequence update: February 10, 2009
Last modified: November 22, 2017
This is version 60 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)