B6YXK0 (B6YXK0_THEON) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Pyruvoyl-dependent arginine decarboxylase HAMAP MF_01404
Short name=PvlArgDC HAMAP MF_01404
EC=4.1.1.19 HAMAP MF_01404

Gene names

Name:	pdaD HAMAP MF_01404
Ordered Locus Names:	TON_1323

Organism

Thermococcus onnurineus (strain NA1) [Complete proteome] [HAMAP]

Taxonomic identifier

523850 [NCBI]

Taxonomic lineage

Archaea › Euryarchaeota › Thermococci › Thermococcales › Thermococcaceae › Thermococcus

Protein attributes

Sequence length	172 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	L-arginine = agmatine + CO2. HAMAP MF_01404
Cofactor	Pyruvoyl group By similarity. HAMAP MF_01404
Sequence similarities	Belongs to the pdaD family. HAMAP MF_01404

Ontologies

Keywords
Ligand	Pyruvate HAMAP MF_01404
Molecular function	Decarboxylase HAMAP MF_01404 Lyase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	arginine catabolic process Inferred from electronic annotation. Source: InterPro
Molecular function	arginine decarboxylase activity Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Sites
	Site	58 – 59	2	Cleavage (non-hydrolytic) By similarity HAMAP MF_01404
Amino acid modifications
	Modified residue	59	1	Pyruvic acid (Ser) By similarity HAMAP MF_01404

Sequences

	Sequence		Length	Mass (Da)
	B6YXK0 [UniParc]. Last modified January 20, 2009. Version 1. Checksum: 104EFD51463F947E	FASTA	172	18,759
	10 20 30 40 50 60 MYNRLIREKG KEEVGMSWTT PKRAFIGAAT AEGGTKLNAF DNALLKLGIG NVNLVKLSSV 70 80 90 100 110 120 IPAHIEWIDQ VHDVPIGMLL PTVYAHIESD EPGMTISAAL GIGISEGNAG GLIYEYAGYC 130 140 150 160 170 TKEEAEEMVR KMVEEGFRVR GWKLKEFKVA SAEITVRDKP AAAIAAVVMF PY

References

[1]

"The complete genome sequence of Thermococcus onnurineus NA1 reveals a mixed heterotrophic and carboxydotrophic metabolism." Lee H.S., Kang S.G., Bae S.S., Lim J.K., Cho Y., Kim Y.J., Jeon J.H., Cha S.-S., Kwon K.K., Kim H.-T., Park C.-J., Lee H.-W., Kim S.I., Chun J., Colwell R.R., Kim S.-J., Lee J.-H. J. Bacteriol. 190:7491-7499(2008) [PubMed: 18790866] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000855 Genomic DNA. Translation: ACJ16813.1.
RefSeq	YP_002307710.1. NC_011529.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	B6YXK0.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	7018351.
GenomeReviews	Gene locus TON_1323 in contig CP000855_GR.
KEGG	ton:TON_1323.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG539680.
OMA	LVPTAYG.
ProtClustDB	PRK01285.
Family and domain databases
HAMAP	MF_01404. PvlArgDC. [Tree]
InterPro	IPR016104. Pyr-dep_his/arg-deCO2ase. IPR016105. Pyr-dep_his/arg-deCO2ase_sand. IPR002724. Pyruvoyl-dep_arg_deCO2ase. [Graphical view]
Gene3D	G3DSA:3.50.20.10. Pyr-dep_his/arg-deCO2ase_sand. 1 hit.
KO	K02626.
Pfam	PF01862. PvlArgDC. 1 hit. [Graphical view]
PIRSF	PIRSF005216. Pyruvoyl-dep_arg_deCO2ase. 1 hit.
ProDom	PD010449. Pyruvoyl-dep_arg_deCO2ase. 1 hit. [Graphical view] [Entries sharing at least one domain]
SUPFAM	SSF56271. His_carbxylase. 1 hit.
TIGRFAMs	TIGR00286. TIGR00286. 1 hit.
ProtoNet	Search...

Entry information

Entry name

B6YXK0_THEON

Accession

Primary (citable) accession number: B6YXK0

Entry history

Integrated into UniProtKB/TrEMBL:	January 20, 2009
Last sequence update:	January 20, 2009
Last modified:	November 16, 2011
This is version 17 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)