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B6YRL1 (SYN_AZOPC) Reviewed, UniProtKB/Swiss-Prot

Last modified January 25, 2012. Version 25. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Asparagine--tRNA ligase
EC=6.1.1.22
Alternative name(s):
Asparaginyl-tRNA synthetase
Short name=AsnRS
Gene names
Name:asnS
Ordered Locus Names:CFPG_570
OrganismAzobacteroides pseudotrichonymphae genomovar. CFP2 [Complete proteome] [HAMAP]
Taxonomic identifier511995 [NCBI]
Taxonomic lineageBacteria › Bacteroidetes › Bacteroidia › Bacteroidales › Candidatus Azobacteroides

Protein attributes

Sequence length464 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

ATP + L-asparagine + tRNA(Asn) = AMP + diphosphate + L-asparaginyl-tRNA(Asn). HAMAP MF_00534

Subunit structure

Homodimer By similarity. HAMAP MF_00534

Subcellular location

Cytoplasm By similarity HAMAP MF_00534.

Sequence similarities

Belongs to the class-II aminoacyl-tRNA synthetase family.

Ontologies

Keywords
   Biological processProtein biosynthesis
   Cellular componentCytoplasm
   LigandATP-binding
Nucleotide-binding
   Molecular functionAminoacyl-tRNA synthetase
Ligase
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processasparaginyl-tRNA aminoacylation

Inferred from electronic annotation. Source: InterPro

   Cellular componentcytoplasm

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular functionATP binding

Inferred from electronic annotation. Source: UniProtKB-KW

asparagine-tRNA ligase activity

Inferred from electronic annotation. Source: EC

nucleic acid binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 464464Asparagine--tRNA ligase HAMAP MF_00534
PRO_1000211899

Sequences

Sequence LengthMass (Da)Tools
B6YRL1 [UniParc].

Last modified January 20, 2009. Version 1.
Checksum: BDA6EBFD2617B7C8

FASTA46453,542
        10         20         30         40         50         60 
MKMKRARIVD LLSTPDFNRK VCVKGWVRTR RGNKNISFIE LNDGSTVHGI QIVVNVVKLG 

        70         80         90        100        110        120 
EDSLKSITTG ACIAINGLLV KSKGEGQKVE IQADEIEIYG IADPSVYPLQ KKWHSLEFLR 

       130        140        150        160        170        180 
EIAYLRPRTN TFGCILRIRH HLAYAIHKYF NKQGFFYFHT PIITSSDAEG AGSMFQITDL 

       190        200        210        220        230        240 
DIANCPKTKD GEVDYTRDFF GCSTNLTVSG QLEGELGALA LGGIYTFGPI FRAEKSNTPR 

       250        260        270        280        290        300 
HLAEFWMIEP EIAFYDINDN MDLAEDFLKY IISYAMKYCK DDIEFLNNTY NNELIEHLNF 

       310        320        330        340        350        360 
VLSNRFVRLA YSEGIRILEQ SNEEFEFPIY WGIDLQSEHE RYLVEKYFKC PVIMTNYPKD 

       370        380        390        400        410        420 
IKSFYMKQND DGRTVRGMDV LFPRIGEIIG GSERESDHQK LLKRIKELNM SMDNLWWYLD 

       430        440        450        460 
TRRFGTAPHS GFGLGFERLV LFVTGMQNIR DVIPFPRTPK NAEF

« Hide

References

[1]"Genome of an endosymbiont coupling N2 fixation to cellulolysis within RT protist cells in termite gut."
Hongoh Y., Sharma V.K., Prakash T., Noda S., Toh H., Taylor T.D., Kudo T., Sakaki Y., Toyoda A., Hattori M., Ohkuma M.
Science 322:1108-1109(2008) [PubMed: 19008447] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AP010656 Genomic DNA. Translation: BAG83833.1.
RefSeqYP_002309244.1. NC_011565.1.

3D structure databases

ModBaseSearch...

Protein-protein interaction databases

STRINGB6YRL1.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID7039797.
GenomeReviewsGene locus CFPG_570 in contig AP010656_GR.
KEGGaps:CFPG_570.
PATRIC31963042. VBICanAzo57536_0875.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHBG745843.
OMAAIHRFFH.
ProtClustDBPRK03932.

Family and domain databases

HAMAPMF_00534. Asn_tRNA_synth.
[Tree]
InterProIPR004364. aa-tRNA-synt_II.
IPR018150. aa-tRNA-synt_II-like.
IPR006195. aa-tRNA-synth_II.
IPR004522. Asn-tRNA-synth_IIb.
IPR002312. Asp/Asn-tRNA-synth_IIb.
IPR012340. NA-bd_OB-fold.
IPR016027. NA-bd_OB-fold-like.
IPR004365. NA-bd_OB_tRNA-helicase.
[Graphical view]
Gene3DG3DSA:2.40.50.140. OB_NA_bd_sub. 1 hit.
KOK01893.
PANTHERPTHR22594. aa-tRNA-synt_II. 1 hit.
PTHR22594:SF6. PTHR22594:SF6. 1 hit.
PfamPF00152. tRNA-synt_2. 1 hit.
PF01336. tRNA_anti. 1 hit.
[Graphical view]
PRINTSPR01042. TRNASYNTHASP.
SUPFAMSSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMsTIGR00457. AsnS. 1 hit.
PROSITEPS50862. AA_TRNA_LIGASE_II. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameSYN_AZOPC
AccessionPrimary (citable) accession number: B6YRL1
Entry history
Integrated into UniProtKB/Swiss-Prot: September 22, 2009
Last sequence update: January 20, 2009
Last modified: January 25, 2012
This is version 25 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

Aminoacyl-tRNA synthetases

List of aminoacyl-tRNA synthetase entries

SIMILARITY comments

Index of protein domains and families

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