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B6YRB7 (B6YRB7_AZOPC) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 27. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
UDP-N-acetylmuramoylalanine--D-glutamate ligase HAMAP MF_00639 RuleBase RU003664
EC=6.3.2.9 HAMAP MF_00639 RuleBase RU003664
Alternative name(s):
D-glutamic acid-adding enzyme HAMAP MF_00639
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase HAMAP MF_00639
Gene names
Name:murD HAMAP MF_00639
Ordered Locus Names:CFPG_476
OrganismAzobacteroides pseudotrichonymphae genomovar. CFP2 [Complete proteome] [HAMAP]
Taxonomic identifier511995 [NCBI]
Taxonomic lineageBacteria › Bacteroidetes › Bacteroidia › Bacteroidales › Candidatus Azobacteroides

Protein attributes

Sequence length452 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) By similarity. HAMAP MF_00639 RuleBase RU003664 SAAS SAAS005762

Catalytic activity

ATP + UDP-N-acetylmuramoyl-L-alanine + glutamate = ADP + phosphate + UDP-N-acetylmuramoyl-L-alanyl-D-glutamate. HAMAP MF_00639 RuleBase RU003664 SAAS SAAS005762

Pathway

Cell wall biogenesis; peptidoglycan biosynthesis. HAMAP MF_00639 RuleBase RU003664 SAAS SAAS005762

Subcellular location

Cytoplasm By similarity HAMAP MF_00639 RuleBase RU003664 SAAS SAAS005762.

Sequence similarities

Belongs to the MurCDEF family. HAMAP MF_00639 RuleBase RU003630

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Nucleotide binding117 – 1237ATP By similarity HAMAP MF_00639

Sequences

Sequence LengthMass (Da)Tools
B6YRB7 [UniParc].

Last modified January 20, 2009. Version 1.
Checksum: 75A45C5FA4B8E185

FASTA45251,161
        10         20         30         40         50         60 
MNDFNKKNVS RIVILGAGES GVGAAVLAKK QGFDTFVSDI SEIKKSHKDI LGKYGILYEE 

        70         80         90        100        110        120 
KRHSEEQILN ADRIIKSPGI SNKISIIEKM KERNIPIISE IEFAGYYTKA KTICITGSNG 

       130        140        150        160        170        180 
KTTTATLIYY ILKYAGFDVA LVGNVGKSLA MQVAEKDCNY YVIELSSFQL DGMYHFKADI 

       190        200        210        220        230        240 
AVLLNITSDH LDCYEYEIQN YINSKMRIIQ NQTKNDIFIY WSDDLVIARE IQKMKPTVTF 

       250        260        270        280        290        300 
YPFSEQKQVG VKAYTENGNI KVETANGMFS MPQKYLVLRG KHNLYNSLAA TAVAKLLGVK 

       310        320        330        340        350        360 
DEMLEHSFLN FKAIEHRMEK VAHIKGVDYI NDSKATNVNS CFYVLQSMRT PIILILGGVD 

       370        380        390        400        410        420 
KGNDYSEIEG LVREKCRALI FLGVDNSKLH DFFDGKVNVI YDVDSMKKAI QYAYKIAQEG 

       430        440        450 
DTVLLSPCCS SFDLFQNYED RGKQFKKYVC NL

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References

[1]"Genome of an endosymbiont coupling N2 fixation to cellulolysis within RT protist cells in termite gut."
Hongoh Y., Sharma V.K., Prakash T., Noda S., Toh H., Taylor T.D., Kudo T., Sakaki Y., Toyoda A., Hattori M., Ohkuma M.
Science 322:1108-1109(2008) [PubMed: 19008447] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AP010656 Genomic DNA. Translation: BAG83739.1.
RefSeqYP_002309150.1. NC_011565.1.

3D structure databases

ProteinModelPortalB6YRB7.
ModBaseSearch...

Protein-protein interaction databases

STRINGB6YRB7.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID7039222.
GenomeReviewsGene locus CFPG_476 in contig AP010656_GR.
KEGGaps:CFPG_476.
PATRIC31962762. VBICanAzo57536_0740.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHBG750024.
OMAACASWDM.

Family and domain databases

HAMAPMF_00639. MurD.
[Tree]
InterProIPR004101. Mur_ligase_C.
IPR013221. Mur_ligase_cen.
IPR016040. NAD(P)-bd_dom.
IPR005762. UDP-N-AcMur-Glu_ligase.
[Graphical view]
Gene3DG3DSA:3.90.190.20. Mur_ligase_C. 1 hit.
G3DSA:3.40.1190.10. Mur_ligase_cen. 1 hit.
G3DSA:3.40.50.720. NAD(P)-bd. 1 hit.
KOK01925.
PANTHERPTHR23135:SF2. PTHR23135:SF2. 1 hit.
PfamPF02875. Mur_ligase_C. 1 hit.
PF08245. Mur_ligase_M. 1 hit.
[Graphical view]
SUPFAMSSF53244. Mur_ligase_C. 1 hit.
SSF53623. Mur_ligase_cen. 1 hit.
TIGRFAMsTIGR01087. MurD. 1 hit.
ProtoNetSearch...

Entry information

Entry nameB6YRB7_AZOPC
AccessionPrimary (citable) accession number: B6YRB7
Entry history
Integrated into UniProtKB/TrEMBL: January 20, 2009
Last sequence update: January 20, 2009
Last modified: December 14, 2011
This is version 27 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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