B6YPZ3 (B6YPZ3_AZOPC) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Arginine--tRNA ligase HAMAP MF_00123
EC=6.1.1.19 HAMAP MF_00123

Alternative name(s):
Arginyl-tRNA synthetase HAMAP MF_00123

Gene names

Name:	argS HAMAP MF_00123
Ordered Locus Names:	CFPG_002

Organism

Azobacteroides pseudotrichonymphae genomovar. CFP2 [Complete proteome] [HAMAP]

Taxonomic identifier

511995 [NCBI]

Taxonomic lineage

Bacteria › Bacteroidetes › Bacteroidia › Bacteroidales › Candidatus Azobacteroides

Protein attributes

Sequence length	592 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	ATP + L-arginine + tRNA(Arg) = AMP + diphosphate + L-arginyl-tRNA(Arg). HAMAP MF_00123
Subunit structure	Monomer By similarity. HAMAP MF_00123
Subcellular location	Cytoplasm By similarity HAMAP MF_00123.
Sequence similarities	Belongs to the class-I aminoacyl-tRNA synthetase family. HAMAP MF_00123 RuleBase RU003489

Ontologies

Keywords
Biological process	Protein biosynthesis HAMAP MF_00123 RuleBase RU003489
Cellular component	Cytoplasm HAMAP MF_00123
Ligand	ATP-binding HAMAP MF_00123 RuleBase RU003489 Nucleotide-binding
Molecular function	Aminoacyl-tRNA synthetase HAMAP MF_00123 RuleBase RU003489 EMBL BAG83265.1 Ligase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	arginyl-tRNA aminoacylation Inferred from electronic annotation. Source: HAMAP
Cellular component	cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular function	ATP binding Inferred from electronic annotation. Source: HAMAP arginine-tRNA ligase activity Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Regions
	Motif	121 – 131	11	"HIGH" region By similarity HAMAP MF_00123

Sequences

	Sequence		Length	Mass (Da)
	B6YPZ3 [UniParc]. Last modified January 20, 2009. Version 1. Checksum: 4E598B26C4C632C4	FASTA	592	68,218
	10 20 30 40 50 60 MNIQELIQKD LKRLYAREIP ESSIQLQKTK KEFEGNLTLI IFPLLKISKK DIEQTAMEIG 70 80 90 100 110 120 EYLLKNQSII IGYNAIKGFL NLTLSSTYWI NSLNTIHRTK NYGMKKITNN SPLIMIEYSS 130 140 150 160 170 180 PNTNKPLHLG HIRNILLGYS ISEILKATGN QIVKTNIVND RGIHICKSML AWKKWGNGET 190 200 210 220 230 240 PNSSGKKGDH LIGEYYVKFN QEYKKEILTM EASGLTPKEA EEKSLLMFEA REMLRKWETG 250 260 270 280 290 300 DPETIHLWKI TNNWVHIGFK ETYKTLGVDF DKIYYESQTY LEGKKKILEG FEKGIFYKKE 310 320 330 340 350 360 DGSIWANLAS NGLGEKLLLR SDGTSVYITQ DIGTAKLRFD DYSINKMIYI AGNEQNYHFQ 370 380 390 400 410 420 ALSLLLDKLG FEFSKNLIHF SYGMVELPEG KMKSREGTVV DADDLIEEMI QTAKEISNKL 430 440 450 460 470 480 GKLGKCTDKE TNEVYKIISM GALKYFILKV DPRKNMTFNP KESIDFNGNT GPFIQYTYAR 490 500 510 520 530 540 IKSILKKSNI KIQCIKSIST NIFLNEKEKN IIQLLSDFPT IVQEAADNFD PSIIANYTFC 550 560 570 580 590 IAKEYNQFYH NYSILKEENE DIQKFRLILS YNTSKIIKMS FKLLGINVPE RM

References

[1]

"Genome of an endosymbiont coupling N2 fixation to cellulolysis within RT protist cells in termite gut." Hongoh Y., Sharma V.K., Prakash T., Noda S., Toh H., Taylor T.D., Kudo T., Sakaki Y., Toyoda A., Hattori M., Ohkuma M. Science 322:1108-1109(2008) [PubMed: 19008447] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	AP010656 Genomic DNA. Translation: BAG83265.1.
RefSeq	YP_002308676.1. NC_011565.1.
3D structure databases
ProteinModelPortal	B6YPZ3.
ModBase	Search...
Protein-protein interaction databases
STRING	B6YPZ3.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	7039979.
GenomeReviews	Gene locus CFPG_002 in contig AP010656_GR.
KEGG	aps:CFPG_002.
PATRIC	31961479. VBICanAzo57536_0131.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG695395.
OMA	FHEEAEK.
ProtClustDB	PRK01611.
Family and domain databases
HAMAP	MF_00123. Arg_tRNA_synth. [Tree]
InterPro	IPR001412. aa-tRNA-synth_I_CS. IPR001278. Arg-tRNA-synth_Ia. IPR015945. Arg-tRNA-synth_Ia_core. IPR005148. Arg-tRNA-synth_N. IPR008909. DALR_anticod-bd. IPR014729. Rossmann-like_a/b/a_fold. IPR009080. tRNAsynth_1a_anticodon-bd. [Graphical view]
Gene3D	G3DSA:3.30.1360.70. Arg-tRNA-synth_Ic_N. 1 hit. G3DSA:3.40.50.620. Rossmann-like_a/b/a_fold. 1 hit.
KO	K01887.
PANTHER	PTHR11956. Arg_tRNA-synt_1c. 1 hit.
Pfam	PF03485. Arg_tRNA_synt_N. 1 hit. PF05746. DALR_1. 1 hit. PF00750. tRNA-synt_1d. 1 hit. [Graphical view]
PRINTS	PR01038. TRNASYNTHARG.
SMART	SM01016. Arg_tRNA_synt_N. 1 hit. SM00836. DALR_1. 1 hit. [Graphical view]
SUPFAM	SSF55190. Arg-tRNA-synth_Ic_N. 1 hit. SSF47323. tRNAsyn_1a_bind. 1 hit.
TIGRFAMs	TIGR00456. ArgS. 1 hit.
PROSITE	PS00178. AA_TRNA_LIGASE_I. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B6YPZ3_AZOPC

Accession

Primary (citable) accession number: B6YPZ3

Entry history

Integrated into UniProtKB/TrEMBL:	January 20, 2009
Last sequence update:	January 20, 2009
Last modified:	January 25, 2012
This is version 28 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)