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B6VLT4 (B6VLT4_PHOAA) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 34. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length120 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Binds the 23S rRNA By similarity. HAMAP-Rule MF_00501

Cofactor

Binds 1 zinc ion per subunit By similarity. HAMAP-Rule MF_00501

Subunit structure

Part of the 50S ribosomal subunit By similarity. HAMAP-Rule MF_00501

Sequence similarities

Belongs to the ribosomal protein L31P family. Type A subfamily. HAMAP-Rule MF_00501

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Metal binding651Zinc By similarity HAMAP-Rule MF_00501
Metal binding671Zinc By similarity HAMAP-Rule MF_00501
Metal binding861Zinc By similarity HAMAP-Rule MF_00501
Metal binding891Zinc By similarity HAMAP-Rule MF_00501

Sequences

Sequence LengthMass (Da)Tools
B6VLT4 [UniParc].

Last modified December 16, 2008. Version 1.
Checksum: A75B854CE0EC36AF

FASTA12013,446
        10         20         30         40         50         60 
MDFIAREADI LYDPPPLVRK IPNLFYQRDV WCLAATGLDS DTALNRGYPM KKGIHPKYEE 

        70         80         90        100        110        120 
VTATCSCGNV IQIRSTVGHS LNLDVCGQCH PFYTGKQRDV ATGGRVDRFK KRFNVPGVSK

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References

« Hide 'large scale' references
[1]"Rapid virulence annotation (RVA): identification of virulence factors using a bacterial genome library and multiple invertebrate hosts."
Waterfield N.R., Sanchez-Contreras M., Eleftherianos I., Dowling A., Yang G., Wilkinson P., Parkhill J., Thomson N., Reynolds S.E., Bode H.B., Dorus S., Ffrench-Constant R.H.
Proc. Natl. Acad. Sci. U.S.A. 105:15967-15972(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: ATCC 43949 EMBL CAR67114.1.
[2]Crossman L.C.
Submitted (MAY-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: ATCC43949 EMBL CAQ86333.1.
[3]Thomson N.R.
Submitted (SEP-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: ATCC 43949 EMBL CAR67114.1.
[4]"Comparative genomics of the emerging human pathogen Photorhabdus asymbiotica with the insect pathogen Photorhabdus luminescens."
Wilkinson P., Waterfield N.R., Crossman L., Corton C., Sanchez-Contreras M., Vlisidou I., Barron A., Bignell A., Clark L., Doggett J., Ormond D., Mayho M., Bason N., Smith F., Simmonds M., Arrowsmith C., Churcher C., Harris D. expand/collapse author list , Thompson N.R., Quail M., Parkhill J., Ffrench-Constant R.H.
BMC Genomics 10:302-302(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 43949 / 3105-77 and ATCC43949 EMBL CAQ86333.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		FM162591 Genomic DNA. Translation: CAQ86333.1.
FM211051 Genomic DNA. Translation: CAR67114.1.
RefSeqYP_003043074.1. NC_012962.1.

3D structure databases

ModBaseSearch...

Protein-protein interaction databases

STRING291112.PAU_04246.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCAQ86333; CAQ86333; PAU_04246.
GeneID13863326.
KEGGpay:PAU_04246.
PATRIC20503106. VBIPhoAsy71438_4763.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000284894.
KOK02909.

Enzyme and pathway databases

BioCycPASY291112:GJQ0-4402-MONOMER.

Family and domain databases

HAMAPMF_00501. Ribosomal_L31_1.
InterProIPR002150. Ribosomal_L31.
[Graphical view]
PfamPF01197. Ribosomal_L31. 1 hit.
[Graphical view]
PRINTSPR01249. RIBOSOMALL31.
TIGRFAMsTIGR00105. L31. 1 hit.
PROSITEPS01143. RIBOSOMAL_L31. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB6VLT4_PHOAA
AccessionPrimary (citable) accession number: B6VLT4
Secondary accession number(s): C7BRC5
Entry history
Integrated into UniProtKB/TrEMBL: December 16, 2008
Last sequence update: December 16, 2008
Last modified: May 1, 2013
This is version 34 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info