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Protein
Submitted name:

Type iii secretion outer membrane protein pscc

Gene

sctC

Organism
Photorhabdus asymbiotica subsp. asymbiotica (strain ATCC 43949 / 3105-77) (Xenorhabdus luminescens (strain 2))
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

TransportUniRule annotation

Enzyme and pathway databases

BioCyciPASY291112:GJQ0-1080-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Type iii secretion outer membrane protein psccImported
Gene namesi
Name:sctCImported
Ordered Locus Names:PAU_01037Imported
ORF Names:PA-RVA1-4448Imported
OrganismiPhotorhabdus asymbiotica subsp. asymbiotica (strain ATCC 43949 / 3105-77) (Xenorhabdus luminescens (strain 2))Imported
Taxonomic identifieri553480 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaePhotorhabdus
Proteomesi
  • UP000002747 Componenti: Chromosome

Subcellular locationi

  • Cell outer membrane UniRule annotation

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 3030Sequence analysisAdd
BLAST
Chaini31 – 618588Sequence analysisPRO_5007644283Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi553480.PAU_01037r.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini116 – 17560Secretin_NInterPro annotationAdd
BLAST
Domaini189 – 28294Secretin_NInterPro annotationAdd
BLAST

Sequence similaritiesi

Belongs to the GSP D family.UniRule annotation

Keywords - Domaini

SignalSequence analysis

Phylogenomic databases

eggNOGiENOG4105K44. Bacteria.
COG1450. LUCA.
KOiK03219.
OMAiYLMARIS.
OrthoDBiEOG6423BN.

Family and domain databases

InterProiIPR005644. NolW-like.
IPR004846. T2SS/T3SS.
IPR004845. T2SS_GspD_CS.
IPR003522. T3SS_OM_pore_YscC.
[Graphical view]
PfamiPF00263. Secretin. 1 hit.
PF03958. Secretin_N. 2 hits.
[Graphical view]
PRINTSiPR01337. TYPE3OMGPROT.
TIGRFAMsiTIGR02516. type_III_yscC. 1 hit.
PROSITEiPS00875. T2SP_D. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B6VK49-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAAMKQFQRL CRYLLLSLSI STMILPSAFS QDLDWLPTPY NYLAKGESLR
60 70 80 90 100
DVLVNFGANY EASVIVSDKV TDQVSGHFEH EGPQEFLQHL SSLYNLVWYY
110 120 130 140 150
DGSVLYVFKN SEIQSRLLKL EQTNATELKQ VLKRAGIWES RFGWRPDSNN
160 170 180 190 200
QLVYVSGPPR YLELVDQTAS ALEQQSLLRS EKTGALTIEI FPLKYASVVD
210 220 230 240 250
RKIQYRDTNI EAPGIATVLS RLLSDANVTT VTGEMSSSTG GNHSSRAVIQ
260 270 280 290 300
AEPSLNAIIV RDNPERMSMY THLINALDKP SARIEVALSI VDINADNLSE
310 320 330 340 350
LGVDWQVGIN TGPRHIIDIT TSAREKEKEK NGGKGESIGS TALGSLVDRR
360 370 380 390 400
GLDYLLAKIT LLESKGSAQV VSRPTLLTQE NTQAVIDHNE TYYVKVEGER
410 420 430 440 450
VAELKSLTYG TMLRMTPRVI KIGDTPEISL NLHIEDGNQK PNSSGLGGIP
460 470 480 490 500
TINRTIVDTV ARVGHGQSLL IGGIYRDEMS ETVRKVPFLG DIPYLGVLFR
510 520 530 540 550
TTTEQVRRSV RLFIIEPRLI DSGVANYLAL GNGQDLRTGL LATQDISNQS
560 570 580 590 600
ISLSKALSSA QCQPLSSARQ MQETLRQAGK SSFLTSCRMG NVYGWRIIEQ
610
QCSLKDTWCV RAQNKASK
Length:618
Mass (Da):68,495
Last modified:December 16, 2008 - v1
Checksum:iFEE933EF9868587D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FM162591 Genomic DNA. Translation: CAQ83129.1.
FM211043 Genomic DNA. Translation: CAR66529.1.

Genome annotation databases

EnsemblBacteriaiCAQ83129; CAQ83129; PAU_01037.
KEGGipay:PAU_01037.
PATRICi20495787. VBIPhoAsy71438_1175.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FM162591 Genomic DNA. Translation: CAQ83129.1.
FM211043 Genomic DNA. Translation: CAR66529.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi553480.PAU_01037r.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAQ83129; CAQ83129; PAU_01037.
KEGGipay:PAU_01037.
PATRICi20495787. VBIPhoAsy71438_1175.

Phylogenomic databases

eggNOGiENOG4105K44. Bacteria.
COG1450. LUCA.
KOiK03219.
OMAiYLMARIS.
OrthoDBiEOG6423BN.

Enzyme and pathway databases

BioCyciPASY291112:GJQ0-1080-MONOMER.

Family and domain databases

InterProiIPR005644. NolW-like.
IPR004846. T2SS/T3SS.
IPR004845. T2SS_GspD_CS.
IPR003522. T3SS_OM_pore_YscC.
[Graphical view]
PfamiPF00263. Secretin. 1 hit.
PF03958. Secretin_N. 2 hits.
[Graphical view]
PRINTSiPR01337. TYPE3OMGPROT.
TIGRFAMsiTIGR02516. type_III_yscC. 1 hit.
PROSITEiPS00875. T2SP_D. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Rapid virulence annotation (RVA): identification of virulence factors using a bacterial genome library and multiple invertebrate hosts."
    Waterfield N.R., Sanchez-Contreras M., Eleftherianos I., Dowling A., Wilkinson P., Parkhill J., Thomson N., Reynolds S.E., Bode H.B., Dorus S., Ffrench-Constant R.H.
    Proc. Natl. Acad. Sci. U.S.A. 105:15967-15972(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: ATCC 43949Imported.
  2. Thomson N.R.
    Submitted (SEP-2008) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: ATCC 43949Imported.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 43949 / 3105-77Imported and ATCC43949Imported.

Entry informationi

Entry nameiB6VK49_PHOAA
AccessioniPrimary (citable) accession number: B6VK49
Secondary accession number(s): C7BPD9
Entry historyi
Integrated into UniProtKB/TrEMBL: December 16, 2008
Last sequence update: December 16, 2008
Last modified: July 6, 2016
This is version 55 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.