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Protein

Superoxide dismutase [Cu-Zn]

Gene
N/A
Organism
Zea mays (Maize)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

Destroys radicals which are normally produced within the cells and which are toxic to biological systems.UniRule annotation

Catalytic activityi

2 superoxide + 2 H+ = O2 + H2O2.UniRule annotation

Cofactori

Protein has several cofactor binding sites:
  • Cu cationUniRule annotationNote: Binds 1 copper ion per subunit.UniRule annotation
  • Zn2+UniRule annotationNote: Binds 1 zinc ion per subunit.UniRule annotation

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

OxidoreductaseUniRule annotationImported

Keywords - Ligandi

CopperUniRule annotation, Metal-bindingUniRule annotation, ZincUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Superoxide dismutase [Cu-Zn]UniRule annotation (EC:1.15.1.1UniRule annotation)
OrganismiZea mays (Maize)Imported
Taxonomic identifieri4577 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaePACMAD cladePanicoideaeAndropogonodaeAndropogoneaeTripsacinaeZea

Expressioni

Gene expression databases

ExpressionAtlasiB6T056. baseline.

Interactioni

Protein-protein interaction databases

STRINGi4577.GRMZM2G025992_P01.

Structurei

3D structure databases

SMRiB6T056. Positions 1-151.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini11 – 147137Sod_CuInterPro annotationAdd
BLAST

Sequence similaritiesi

Belongs to the Cu-Zn superoxide dismutase family.UniRule annotation

Phylogenomic databases

eggNOGiKOG0441. Eukaryota.
COG2032. LUCA.
KOiK04565.

Family and domain databases

Gene3Di2.60.40.200. 1 hit.
InterProiIPR024134. SOD_Cu/Zn_/chaperone.
IPR018152. SOD_Cu/Zn_BS.
IPR001424. SOD_Cu_Zn_dom.
[Graphical view]
PANTHERiPTHR10003. PTHR10003. 1 hit.
PfamiPF00080. Sod_Cu. 1 hit.
[Graphical view]
PRINTSiPR00068. CUZNDISMTASE.
SUPFAMiSSF49329. SSF49329. 1 hit.
PROSITEiPS00087. SOD_CU_ZN_1. 1 hit.
PS00332. SOD_CU_ZN_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B6T056-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVKAVAVLAG TDVKGTIFFS QEGDGPTTVT GSISGLKPGL HGFHVHALGD
60 70 80 90 100
TTNGCMSTGP HFNPVGKEHG APEDEDRHAG DLGNVTAGED GVVNVNITDS
110 120 130 140 150
QIPLAGPHSI IGRAVVVHAD PDDLGKGGHE LSKSTGNAGG RVACGIIGLQ

G
Length:151
Mass (Da):15,104
Last modified:December 16, 2008 - v1
Checksum:i6B1E8C703B17D216
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
EU958371 mRNA. Translation: ACG30489.1.
EU958837 mRNA. Translation: ACG30955.1.
KR105967 mRNA. Translation: ALF00121.1.
KR136339 mRNA. Translation: ALF39500.1.
RefSeqiNP_001105335.1. NM_001111865.1.
XP_008651856.1. XM_008653634.1.
UniGeneiZm.25.

Genome annotation databases

GeneIDi542260.
GrameneiGRMZM2G025992_T03; GRMZM2G025992_P03; GRMZM2G025992.
GRMZM2G025992_T04; GRMZM2G025992_P04; GRMZM2G025992.
GRMZM2G025992_T05; GRMZM2G025992_P05; GRMZM2G025992.
KEGGizma:542260.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
EU958371 mRNA. Translation: ACG30489.1.
EU958837 mRNA. Translation: ACG30955.1.
KR105967 mRNA. Translation: ALF00121.1.
KR136339 mRNA. Translation: ALF39500.1.
RefSeqiNP_001105335.1. NM_001111865.1.
XP_008651856.1. XM_008653634.1.
UniGeneiZm.25.

3D structure databases

SMRiB6T056. Positions 1-151.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi4577.GRMZM2G025992_P01.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi542260.
GrameneiGRMZM2G025992_T03; GRMZM2G025992_P03; GRMZM2G025992.
GRMZM2G025992_T04; GRMZM2G025992_P04; GRMZM2G025992.
GRMZM2G025992_T05; GRMZM2G025992_P05; GRMZM2G025992.
KEGGizma:542260.

Phylogenomic databases

eggNOGiKOG0441. Eukaryota.
COG2032. LUCA.
KOiK04565.

Gene expression databases

ExpressionAtlasiB6T056. baseline.

Family and domain databases

Gene3Di2.60.40.200. 1 hit.
InterProiIPR024134. SOD_Cu/Zn_/chaperone.
IPR018152. SOD_Cu/Zn_BS.
IPR001424. SOD_Cu_Zn_dom.
[Graphical view]
PANTHERiPTHR10003. PTHR10003. 1 hit.
PfamiPF00080. Sod_Cu. 1 hit.
[Graphical view]
PRINTSiPR00068. CUZNDISMTASE.
SUPFAMiSSF49329. SSF49329. 1 hit.
PROSITEiPS00087. SOD_CU_ZN_1. 1 hit.
PS00332. SOD_CU_ZN_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE.
  2. "Differential expression of antioxidant genes in two contrasting maize inbreds."
    Gautam A., Singh I., Yadava P.
    Submitted (APR-2015) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  3. "Differential regulation of antioxidant genes in two contrasting maize inbred lines."
    Gautam A., Singh I., Yadava P.
    Submitted (APR-2015) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.

Entry informationi

Entry nameiB6T056_MAIZE
AccessioniPrimary (citable) accession number: B6T056
Entry historyi
Integrated into UniProtKB/TrEMBL: December 16, 2008
Last sequence update: December 16, 2008
Last modified: May 11, 2016
This is version 54 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.