Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

Type II R-M system restriction endonuclease

Gene

HPP12_0094

Organism
Helicobacter pylori (strain P12)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. DNA binding Source: InterPro
  2. Type II site-specific deoxyribonuclease activity Source: InterPro

GO - Biological processi

  1. DNA restriction-modification system Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

EndonucleaseImported, Hydrolase, Nuclease

Enzyme and pathway databases

BioCyciHPYL570508:GJ8D-101-MONOMER.

Protein family/group databases

REBASEi19174. HpyPIIIP.

Names & Taxonomyi

Protein namesi
Submitted name:
Type II R-M system restriction endonucleaseImported
Gene namesi
Ordered Locus Names:HPP12_0094Imported
OrganismiHelicobacter pylori (strain P12)Imported
Taxonomic identifieri570508 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaEpsilonproteobacteriaCampylobacteralesHelicobacteraceaeHelicobacter
ProteomesiUP000008198: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi570508.HPP12_0094.

Family & Domainsi

Phylogenomic databases

eggNOGiNOG12396.
HOGENOMiHOG000244578.
KOiK01155.
OMAiTNYYGGG.
OrthoDBiEOG60KN76.

Family and domain databases

InterProiIPR011335. Restrct_endonuc-II-like.
IPR021191. Restrct_endonuc_II_DpmII.
IPR007637. Restrct_endonuc_II_DpmII-like.
[Graphical view]
PfamiPF04556. DpnII. 1 hit.
[Graphical view]
PIRSFiPIRSF016080. Restrict_endonuc_II_DpmII. 1 hit.
SUPFAMiSSF52980. SSF52980. 1 hit.

Sequencei

Sequence statusi: Complete.

B6JPJ3-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MKNRLPFDTF LKSLKTSNRT LDFFTDWQKC LKNKNEISIA LNHLNFLLGK
60 70 80 90 100
DTKELKNCIK SLFKEYPKAF DVLNILIAVR DKDDIVRDAN GNFYPLHSYF
110 120 130 140 150
ENDEKVYEFI CQTGLEQIFC NRNIKDLNDF VFGIEVGLDS NARKNRSGKA
160 170 180 190 200
MENHLSGLFV QAQLNFKEQV DIREFKDLCQ AFGNDIKKFD FVIFGKNKTY
210 220 230 240 250
FIEANFYTIS GSKLNEVARS YQDLALKFEA FPNYEFIWIT MAQVGWTLKT

NSKKLTNL
Length:258
Mass (Da):30,159
Last modified:December 16, 2008 - v1
Checksum:i7015CE51D4244D8B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001217 Genomic DNA. Translation: ACJ07254.1.
RefSeqiYP_002300734.1. NC_011498.1.

Genome annotation databases

EnsemblBacteriaiACJ07254; ACJ07254; HPP12_0094.
GeneIDi7010464.
KEGGihpp:HPP12_0094.
PATRICi20608111. VBIHelPyl2824_0102.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001217 Genomic DNA. Translation: ACJ07254.1.
RefSeqiYP_002300734.1. NC_011498.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi570508.HPP12_0094.

Protein family/group databases

REBASEi19174. HpyPIIIP.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACJ07254; ACJ07254; HPP12_0094.
GeneIDi7010464.
KEGGihpp:HPP12_0094.
PATRICi20608111. VBIHelPyl2824_0102.

Phylogenomic databases

eggNOGiNOG12396.
HOGENOMiHOG000244578.
KOiK01155.
OMAiTNYYGGG.
OrthoDBiEOG60KN76.

Enzyme and pathway databases

BioCyciHPYL570508:GJ8D-101-MONOMER.

Family and domain databases

InterProiIPR011335. Restrct_endonuc-II-like.
IPR021191. Restrct_endonuc_II_DpmII.
IPR007637. Restrct_endonuc_II_DpmII-like.
[Graphical view]
PfamiPF04556. DpnII. 1 hit.
[Graphical view]
PIRSFiPIRSF016080. Restrict_endonuc_II_DpmII. 1 hit.
SUPFAMiSSF52980. SSF52980. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "The complete genome sequence of Helicobacter pylori strain P12."
    Fischer W., Windhager L., Karnholz A., Zeiller M., Zimmer R., Haas R.
    Submitted (OCT-2008) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: P12Imported.

Entry informationi

Entry nameiB6JPJ3_HELP2
AccessioniPrimary (citable) accession number: B6JPJ3
Entry historyi
Integrated into UniProtKB/TrEMBL: December 16, 2008
Last sequence update: December 16, 2008
Last modified: February 4, 2015
This is version 36 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.