B6JJC1 (B6JJC1_OLICO) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Translation initiation factor IF-1 EMBL ACI94515.1

Gene names

Name:	infA EMBL ACI94515.1
Ordered Locus Names:	OCA5_c07180 EMBL AEI05441.1, OCAR_7412

Organism

Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) [Complete proteome] [HAMAP]

Taxonomic identifier

504832 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Bradyrhizobiaceae › Oligotropha

Protein attributes

Sequence length	93 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Contains 1 S1-like domain. RuleBase RU004366

Ontologies

Keywords
Biological process	Protein biosynthesis
Molecular function	Initiation factor EMBL ACI94515.1
Technical term	Complete proteome
Gene Ontology (GO)
Molecular function	translation initiation factor activity Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B6JJC1 [UniParc]. Last modified December 16, 2008. Version 1. Checksum: 3067536BDE3EE8FC	FASTA	93	10,676
	10 20 30 40 50 60 MAKEELIQFE GLVTEILPDA RYRVQLDAGH EIVAYTAGKM KKNRIKTLAG DRVTIEMSPY 70 80 90 DLEKGRLIFR HKDERPAGGP PRSTPPRGQF RRR

References

[1]	"Genome sequence of the chemolithoautotrophic bacterium Oligotropha carboxidovorans OM5T." Paul D., Bridges S., Burgess S.C., Dandass Y., Lawrence M.L. J. Bacteriol. 190:5531-5532(2008) [PubMed: 18539730] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 49405 / DSM 1227 / OM5 [Mississippi].
[2]	"Complete genome sequences of the chemolithoautotrophic Oligotropha carboxidovorans strains OM4 and OM5." Volland S., Rachinger M., Strittmatter A., Daniel R., Gottschalk G., Meyer O. J. Bacteriol. 193:5043-5043(2011) [PubMed: 21742883] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 49405 / DSM 1227 / OM5 and OM5 EMBL AEI05441.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001196 Genomic DNA. Translation: ACI94515.1. CP002826 Genomic DNA. Translation: AEI05441.1.
RefSeq	YP_002290380.1. NC_011386.1. YP_004631682.1. NC_015684.1.
3D structure databases
ProteinModelPortal	B6JJC1.
ModBase	Search...
Protein-protein interaction databases
STRING	B6JJC1.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	10845850. 6992888.
GenomeReviews	Gene locus OCAR_7412 in contig CP001196_GR.
KEGG	oca:OCAR_7412.
PATRIC	22808611. VBIOliCar134280_3249.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG286099.
OMA	VQLDAGH.
ProtClustDB	PRK00276.
Family and domain databases
HAMAP	MF_00075. IF_1. [Tree]
InterPro	IPR012340. NA-bd_OB-fold. IPR016027. NA-bd_OB-fold-like. IPR022967. RNA-binding_domain_S1. IPR006196. RNA-binding_domain_S1_IF1. IPR004368. TIF_IF1. [Graphical view]
Gene3D	G3DSA:2.40.50.140. OB_NA_bd_sub. 1 hit.
KO	K02518.
Pfam	PF01176. eIF-1a. 1 hit. [Graphical view]
SMART	SM00316. S1. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR00008. InfA. 1 hit.
PROSITE	PS50832. S1_IF1_TYPE. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B6JJC1_OLICO

Accession

Primary (citable) accession number: B6JJC1

Entry history

Integrated into UniProtKB/TrEMBL:	December 16, 2008
Last sequence update:	December 16, 2008
Last modified:	January 25, 2012
This is version 25 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)