B6JHG2 (B6JHG2_OLICO) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
DNA topoisomerase IV subunit B EMBL AEI06724.1
EC=5.99.1.3 EMBL AEI06724.1

Submitted name:
DNA topoisomerase IV, B subunit EMBL ACI93127.1
EC=5.99.1.- EMBL ACI93127.1

Gene names

Name:	parE EMBL ACI93127.1
Ordered Locus Names:	OCA5_c20170 EMBL AEI06724.1, OCAR_6007

Organism

Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) [Complete proteome] [HAMAP]

Taxonomic identifier

504832 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Bradyrhizobiaceae › Oligotropha

Protein attributes

Sequence length	689 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the type II topoisomerase family. RuleBase RU000380

Ontologies

Keywords
Ligand	ATP-binding SAAS SAAS002288 RuleBase RU000380 Nucleotide-binding
Molecular function	Isomerase Topoisomerase SAAS SAAS002288 RuleBase RU000380
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	DNA topological change Inferred from electronic annotation. Source: InterPro
Cellular component	chromosome Inferred from electronic annotation. Source: InterPro
Molecular function	ATP binding Inferred from electronic annotation. Source: UniProtKB-KW DNA topoisomerase (ATP-hydrolyzing) activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B6JHG2 [UniParc]. Last modified December 16, 2008. Version 1. Checksum: E64CF726D2ADFBF1	FASTA	689	75,340
	10 20 30 40 50 60 MSKPLKKNEK SSSSAKPDSD LFGSGGRAPR GSAAPPARTT SAEGGYTAAD IEVLEGLEPV 70 80 90 100 110 120 RRRPGMYIGG TDEKALHHLF AEVIDNSMDE ALAGHASFIE VSLGADGYLT VVDNGRGIPV 130 140 150 160 170 180 DPHPKFKNKS ALEIIMCTLH AGGKFDSKVY ETSGGLHGVG VSVVNALSSE LIVEVARNQK 190 200 210 220 230 240 LYRMTFERGK PKGKLEELGK VHNRRGTSVR FKPDTEIFGN KAVFKPQRLF QMARSKAYLF 250 260 270 280 290 300 GGVEIRWRCA PELLKGLDSV PAEDTFHFPG GLKDYLAAAV HADTLVHPDI FAGKTGRNGA 310 320 330 340 350 360 HGACEWAVAW TADADGFMSS YTNTVPTPDG GTHETGMRSA LLRGIRDHAE RTGQGKKASS 370 380 390 400 410 420 ITSEDVMVGA AVMLSVFVRE PEFQGQTKDR LATAEAQRIV EQAVKDPFDH WLSGNPTQAN 430 440 450 460 470 480 KLLEFIIERA DERLRRRAEK EISRKTAVKK LRLPGKLADC TNTAAEGSEL FIVEGDSAGG 490 500 510 520 530 540 SAKQARDRKT QAILPLRGKI LNVASATRDK MAANAQLSDL IQAIGAGTGA NYREEDLRYS 550 560 570 580 590 600 RIIIMTDADV DGAHIASLLI TFFYRQMPKL IDNGHLYLAV PPLYRLTHGS KTLYARDEAH 610 620 630 640 650 660 RDELLKKEFH ANAKVEIGRF KGLGEMMPNQ LKETTMAPAK RTLLRVVLAT EERDSTAKSV 670 680 ERLMGSKAEA RFEFITERAE FAPEELLDV

References

[1]	"Genome sequence of the chemolithoautotrophic bacterium Oligotropha carboxidovorans OM5T." Paul D., Bridges S., Burgess S.C., Dandass Y., Lawrence M.L. J. Bacteriol. 190:5531-5532(2008) [PubMed: 18539730] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 49405 / DSM 1227 / OM5 [Mississippi].
[2]	"Complete genome sequences of the chemolithoautotrophic Oligotropha carboxidovorans strains OM4 and OM5." Volland S., Rachinger M., Strittmatter A., Daniel R., Gottschalk G., Meyer O. J. Bacteriol. 193:5043-5043(2011) [PubMed: 21742883] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 49405 / DSM 1227 / OM5 and OM5 EMBL AEI06724.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001196 Genomic DNA. Translation: ACI93127.1. CP002826 Genomic DNA. Translation: AEI06724.1.
RefSeq	YP_002288993.1. NC_011386.1. YP_004632965.1. NC_015684.1.
3D structure databases
ProteinModelPortal	B6JHG2.
ModBase	Search...
Protein-protein interaction databases
STRING	B6JHG2.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	10847149. 6992147.
GenomeReviews	Gene locus OCAR_6007 in contig CP001196_GR.
KEGG	oca:OCAR_6007.
PATRIC	22805897. VBIOliCar134280_1906.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG304889.
OMA	QARDKEF.
ProtClustDB	PRK05559.
Family and domain databases
InterPro	IPR003594. ATPase-like_ATP-bd. IPR020568. Ribosomal_S5_D2-typ_fold. IPR014721. Ribosomal_S5_D2-typ_fold_subgr. IPR001241. Topo_IIA. IPR013759. Topo_IIA_B/N_ab. IPR002288. Topo_IIA_B_C. IPR013506. Topo_IIA_bsu_dom2. IPR013760. Topo_IIA_cen. IPR018522. TopoIIA_CS. IPR005737. TopoIV_B_Gneg. IPR006171. Toprim_domain. [Graphical view]
Gene3D	G3DSA:3.30.565.10. ATP_bd_ATPase. 1 hit. G3DSA:3.30.230.10. Ribosomal_S5_D2-type_fold. 1 hit. G3DSA:3.40.50.670. Topo_IIA_B/N_ab. 1 hit.
KO	K02622.
Pfam	PF00204. DNA_gyraseB. 1 hit. PF00986. DNA_gyraseB_C. 1 hit. PF02518. HATPase_c. 1 hit. PF01751. Toprim. 1 hit. [Graphical view]
PRINTS	PR00418. TPI2FAMILY.
SMART	SM00387. HATPase_c. 1 hit. SM00433. TOP2c. 1 hit. [Graphical view]
SUPFAM	SSF55874. ATP_bd_ATPase. 1 hit. SSF54211. Ribosomal_S5_D2-typ_fold. 1 hit. SSF56719. Topo_IIA_cen. 1 hit.
TIGRFAMs	TIGR01055. ParE_Gneg. 1 hit.
PROSITE	PS00177. TOPOISOMERASE_II. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B6JHG2_OLICO

Accession

Primary (citable) accession number: B6JHG2

Entry history

Integrated into UniProtKB/TrEMBL:	December 16, 2008
Last sequence update:	December 16, 2008
Last modified:	January 25, 2012
This is version 28 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)