B6JGY7 (B6JGY7_OLICO) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
B12-dependent ribonucleoside diphosphate reductase EMBL ACI93876.1

Submitted name:
Vitamin B12-dependent ribonucleotide reductase NrdJ EMBL AEI06025.1
EC=1.17.4.1 EMBL AEI06025.1

Gene names

Name:	nrdJ EMBL AEI06025.1
Ordered Locus Names:	OCA5_c13090 EMBL AEI06025.1, OCAR_6765

Organism

Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) [Complete proteome] [HAMAP]

Taxonomic identifier

504832 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Bradyrhizobiaceae › Oligotropha

Protein attributes

Sequence length	1251 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Oxidoreductase EMBL AEI06025.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	DNA replication Inferred from electronic annotation. Source: InterPro
Cellular component	ribonucleoside-diphosphate reductase complex Inferred from electronic annotation. Source: InterPro
Molecular function	cobalamin binding Inferred from electronic annotation. Source: InterPro cobalt ion binding Inferred from electronic annotation. Source: InterPro nucleotide binding Inferred from electronic annotation. Source: InterPro ribonucleoside-diphosphate reductase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B6JGY7 [UniParc]. Last modified December 16, 2008. Version 1. Checksum: D65CCABA62DE752E	FASTA	1,251	137,290
	10 20 30 40 50 60 MRIQRRYTKV DQPPYAAISF RLTTSEIRNP DGSVVFKLDN VEVPEFWSQV ASDVLAQKYF 70 80 90 100 110 120 RKAGVAARLK KVEEETVPSW LWRSVPDTEA LAALPEAERF GGEQSSKQVF DRLAGCWTYW 130 140 150 160 170 180 GWKGGYFTSE DDARAFHDEL RYMLAQQMVA PNSPQWFNTG LHWAYGIDGP GQGHYYVDWK 190 200 210 220 230 240 TGKLTKSKSS YEHPQPHACF IQGIEDDLVN EGGIMDLWVR EARLFKYGSG TGSNFSRLRG 250 260 270 280 290 300 EGEKLSGGGR SSGLMSFLKI GDRAAGAIKS GGTTRRAAKM VVVDADHPDI ETYIDWKVRE 310 320 330 340 350 360 EQKVAALVTG SKINQKHLKA IMKACVNCEG SGDDCFDPEK NPALKREIKL ARRALVTDNM 370 380 390 400 410 420 IKRVIQFARQ GYTDIQFDTF DTDWDSEAYL TVSGQNSNNS VSLKDDFLRA VETDGEWNLV 430 440 450 460 470 480 GRTDGKVRKT LRARDLWEKI GYAAWASADP GLHFNTTMND WHTCKASGDI RASNPCSEYM 490 500 510 520 530 540 FLDDTACNLA SANLLTFYDP HTRRFDTDAY EHLCRLWTIV LEISVMMAQF PSKAIAELSY 550 560 570 580 590 600 EFRTLGLGYA NIGGLLMTMG LPYDSKEGRA LCGALSAIMT GTAYATSAEM AAELGTFPGY 610 620 630 640 650 660 KKNAKHVLRV IRNHRRAAHG VAVGYEALAV DPVPLDHASC PQADIVEHAK AVWDRALELG 670 680 690 700 710 720 ETNGYRNAQT TVVAPTGTIG LVMDCDTTGI EPDFALVKFK KLAGGGYWKI INRAVPEALR 730 740 750 760 770 780 ALGYRESEIA EIEAYAVGHG SLSNAPGINA STLKAKGFTD EALAKVEKAL PTAFDVKFVF 790 800 810 820 830 840 NKWTLGEDFI RNSLNIAPEV MNAPGFDLLV ALGFSKRDIE AANVHICGAM TVEGAPHLKD 850 860 870 880 890 900 EHYAVFDCAN PCGKIGKRYL SVESHIRMMA ASQPFISGAI SKTINMPNDA TVEDCKNAYL 910 920 930 940 950 960 LSWKLALKAN ALYRDGSKLS QPLNSQLIAD EDDEDDAIEA FHDKPMAARA TQVVEKIVER 970 980 990 1000 1010 1020 VVEHVSRERE RMPDRRKGYT QKAIVGGHKV YVRTGEYDDG RLGEIFVDMH KEGAALRSFI 1030 1040 1050 1060 1070 1080 NNFAIAVSLG LQYGVPLEEY VDAFTFTRFE PAGPVQGNDS IKYATSILDY VFRELAVSYL 1090 1100 1110 1120 1130 1140 SRYDLAHVDP SETSFDSLGK GVNEGKAQGP TGPSKYLSRG LTRSRSDNLV VMQGGASAAV 1150 1160 1170 1180 1190 1200 TAHNDSAPVG GSRVTATTSG AAESGAAALK TAEPERALSP TEKLEAEQWS RAGTAQVTAP 1210 1220 1230 1240 1250 APATLSKAER RAEARARGYE GDMCSECSNF TLVRNGTCMK CDTCGATTGC S

References

[1]	"Genome sequence of the chemolithoautotrophic bacterium Oligotropha carboxidovorans OM5T." Paul D., Bridges S., Burgess S.C., Dandass Y., Lawrence M.L. J. Bacteriol. 190:5531-5532(2008) [PubMed: 18539730] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 49405 / DSM 1227 / OM5 [Mississippi].
[2]	"Complete genome sequences of the chemolithoautotrophic Oligotropha carboxidovorans strains OM4 and OM5." Volland S., Rachinger M., Strittmatter A., Daniel R., Gottschalk G., Meyer O. J. Bacteriol. 193:5043-5043(2011) [PubMed: 21742883] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 49405 / DSM 1227 / OM5 and OM5 EMBL AEI06025.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001196 Genomic DNA. Translation: ACI93876.1. CP002826 Genomic DNA. Translation: AEI06025.1.
RefSeq	YP_002289741.1. NC_011386.1. YP_004632266.1. NC_015684.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	B6JGY7.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	10846441. 6990789.
GenomeReviews	Gene locus OCAR_6765 in contig CP001196_GR.
KEGG	oca:OCAR_6765.
PATRIC	22807353. VBIOliCar134280_2626.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG414188.
OMA	FLWRSVP.
ProtClustDB	PRK07562.
Family and domain databases
InterPro	IPR002876. DUF28. IPR017856. Integrase_Zn-bd_dom-like_N. IPR013344. RDP_Rdtase_AdoCbl-dep. IPR000788. Ribncl_red_lg_C. IPR013678. Ribonuc_red_2_N. IPR024434. TSCPD_dom. [Graphical view]
Gene3D	G3DSA:1.10.10.200. Intgrase_N_Zn_bd. 1 hit.
KO	K00525.
Pfam	PF08471. Ribonuc_red_2_N. 1 hit. PF02867. Ribonuc_red_lgC. 2 hits. PF12637. TSCPD. 1 hit. [Graphical view]
PRINTS	PR01183. RIBORDTASEM1.
SUPFAM	SSF75625. DUF28. 1 hit.
TIGRFAMs	TIGR02504. NrdJ_Z. 1 hit.
ProtoNet	Search...

Entry information

Entry name

B6JGY7_OLICO

Accession

Primary (citable) accession number: B6JGY7

Entry history

Integrated into UniProtKB/TrEMBL:	December 16, 2008
Last sequence update:	December 16, 2008
Last modified:	January 25, 2012
This is version 22 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)