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B6JFY6 (B6JFY6_OLICO) Unreviewed, UniProtKB/TrEMBL

Last modified January 25, 2012. Version 20. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
2-dehydro-3-deoxyphosphooctonate aldolase HAMAP MF_00056
EC=2.5.1.55 HAMAP MF_00056
Alternative name(s):
3-deoxy-D-manno-octulosonic acid 8-phosphate synthase HAMAP MF_00056
KDO-8-phosphate synthase HAMAP MF_00056
Phospho-2-dehydro-3-deoxyoctonate aldolase HAMAP MF_00056
Gene names
Name:kdsA HAMAP MF_00056 EMBL ACI93409.1
Ordered Locus Names:OCA5_c17380 EMBL AEI06452.1, OCAR_6296
OrganismOligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) [Complete proteome] [HAMAP]
Taxonomic identifier504832 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Bradyrhizobiaceae › Oligotropha

Protein attributes

Sequence length279 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

Phosphoenolpyruvate + D-arabinose 5-phosphate + H2O = 2-dehydro-3-deoxy-D-octonate 8-phosphate + phosphate. SAAS SAAS006269 HAMAP MF_00056

Pathway

Bacterial outer membrane biogenesis; lipopolysaccharide biosynthesis. SAAS SAAS006269 HAMAP MF_00056

Carbohydrate biosynthesis; 3-deoxy-D-manno-octulosonate biosynthesis; 3-deoxy-D-manno-octulosonate from D-ribulose 5-phosphate: step 2/3. SAAS SAAS006269 HAMAP MF_00056

Subcellular location

Cytoplasm By similarity SAAS SAAS006269 HAMAP MF_00056.

Sequence similarities

Belongs to the KdsA family. HAMAP MF_00056

Sequences

Sequence LengthMass (Da)Tools
B6JFY6 [UniParc].

Last modified December 16, 2008. Version 1.
Checksum: 63F7DC416D872942

FASTA27929,036
        10         20         30         40         50         60 
MVSASKTVSA GNVTFGNDLP LAVIAGPCQL ESRAHALEVA GALKEIAARL KIGLVFKTSF 

        70         80         90        100        110        120 
DKANRTSASA ERGIGLAKAL PIFAEIRDSL GLPVLTDVHE VEQCAEVAQA VDVLQIPAFL 

       130        140        150        160        170        180 
CRQTDLLLAA AATGKVVNVK KGQFLAPWDM QNVVSKITNG GNANVLVTER GASFGYNTLV 

       190        200        210        220        230        240 
SDMRALPIMA RTTGAPVVFD ATHSVQQPGG KGTSSGGERE FVPVLARAAV AVGVAGVFIE 

       250        260        270 
THPDPDHAPS DGPNMVPLKD FEGLLQTLMA FDAVAKAGR

« Hide

References

[1]"Genome sequence of the chemolithoautotrophic bacterium Oligotropha carboxidovorans OM5T."
Paul D., Bridges S., Burgess S.C., Dandass Y., Lawrence M.L.
J. Bacteriol. 190:5531-5532(2008) [PubMed: 18539730] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 49405 / DSM 1227 / OM5 [Mississippi].
[2]"Complete genome sequences of the chemolithoautotrophic Oligotropha carboxidovorans strains OM4 and OM5."
Volland S., Rachinger M., Strittmatter A., Daniel R., Gottschalk G., Meyer O.
J. Bacteriol. 193:5043-5043(2011) [PubMed: 21742883] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 49405 / DSM 1227 / OM5 and OM5 EMBL AEI06452.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001196 Genomic DNA. Translation: ACI93409.1.
CP002826 Genomic DNA. Translation: AEI06452.1.
RefSeqYP_002289274.1. NC_011386.1.
YP_004632693.1. NC_015684.1.

3D structure databases

ProteinModelPortalB6JFY6.
ModBaseSearch...

Protein-protein interaction databases

STRINGB6JFY6.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID10846870.
6990022.
GenomeReviewsGene locus OCAR_6296 in contig CP001196_GR.
KEGGoca:OCAR_6296.
PATRIC22806435. VBIOliCar134280_2168.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHBG575990.
OMAESRDHAF.
ProtClustDBPRK05198.

Family and domain databases

HAMAPMF_00056. KDO8P_synth.
[Tree]
InterProIPR013785. Aldolase_TIM.
IPR006218. DAHP1/KDSA.
IPR006269. KDO8P_synthase.
[Graphical view]
Gene3DG3DSA:3.20.20.70. Aldolase_TIM. 1 hit.
KOK01627.
PANTHERPTHR21057:SF2. KDO8P_synthase. 1 hit.
PfamPF00793. DAHP_synth_1. 1 hit.
[Graphical view]
TIGRFAMsTIGR01362. KDO8P_synth. 1 hit.
ProtoNetSearch...

Entry information

Entry nameB6JFY6_OLICO
AccessionPrimary (citable) accession number: B6JFY6
Entry history
Integrated into UniProtKB/TrEMBL: December 16, 2008
Last sequence update: December 16, 2008
Last modified: January 25, 2012
This is version 20 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry info