B6JFK1 (B6JFK1_OLICO) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP dependent DNA ligase EMBL ACI94021.1

Submitted name:
Putative ATP-dependent DNA ligase EMBL AEI05889.1

Gene names

Ordered Locus Names:

OCA5_c11710 EMBL AEI05889.1, OCAR_6912 EMBL ACI94021.1

Organism

Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) [Complete proteome] [HAMAP] EMBL ACI94021.1

Taxonomic identifier

504832 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Bradyrhizobiaceae › Oligotropha › Oligotropha carboxidovorans

Protein attributes

Sequence length	889 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL ACI94021.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA recombination Inferred from electronic annotation. Source: InterPro DNA repair Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B6JFK1 [UniParc]. Last modified December 16, 2008. Version 1. Checksum: 7ACC5D10DBF384F7	FASTA	889	98,231
	10 20 30 40 50 60 MTRKKLSVYQ TKRDFTKTAE PSGAAKVTRG KLPRFVIQKH DATRLHYDLR LEIDGIFKSW 70 80 90 100 110 120 AVTRGPSLDP KDKRLAVEVE DHPLDYGDFE GTIPKGQYGG GTVMLWDRGF WHSDDPAGGL 130 140 150 160 170 180 KKGDLKFTLE GKKLHGEWVL VRMRHDRTGG KRTNWLLIKH RDEAAREGED ILDQDRSVAS 190 200 210 220 230 240 GRTMEQIAQG KGRGPTPFMT AKGNAKPSRS KADRVWQSNQ GTAAALRAKS VAKTKTLAKP 250 260 270 280 290 300 VQAAVRKVDH LPEFIAPQLC KSVARPSDGA DWIHEIKFDG YRMQLHIQGG KVHLRTRKGL 310 320 330 340 350 360 DWTDKFPAIA KAAAKLPECI IDGEIVALDH EGHPSFASLQ AALSDGDTDE LIFFAFDLLF 370 380 390 400 410 420 DKDSDLRRLP LTERKARLEQ LLDRQSKTSV IRYVAHFDTG GDAVLKSACR LALEGIISKR 430 440 450 460 470 480 RDALYHSGRT ESWTKAKCRA GHEVVIGGWK TTAGKFRSLM VGVPHEDHLA YVGIVGTGYG 490 500 510 520 530 540 QAVVKRIMPE LKKVASTTNP FGGKNAPRKT TGVHWVKPEL VAEIEFAGWT GDNMVRQAAF 550 560 570 580 590 600 KGLRKDKSAD EVQVDEPVVT PIAEPAPRKT NTKANTKTRA KAATRTSSSG NAVVMGLTIS 610 620 630 640 650 660 KPDKPLWPDD GKGEPVTKLD LARYMETMGE YLLPHIEGRP CSIIRAPDGI EGEKFFQRHA 670 680 690 700 710 720 TAGMSNLIDQ VRVSGDRKPY IQIDRIEGLV AAAQIGGVEF HPWNCAPNEP DVPGRLVFDL 730 740 750 760 770 780 DPAPGVNFTD VITAARDLHD RLSSLGLESF CKTTGGKGLH VVTPLKDAKK DRIDWKAAKA 790 800 810 820 830 840 FAQAVCQAMA ADAPERYLIN MSKKKREGKI FLDYLRNDRM STAVAPFSPR GRDFAPVAWP 850 860 870 880 ITWAQARTGL DPLKFTLRTV PALVKTSKAW AGYDRAARSL KDAIRKMGG

References

[1]	"Genome sequence of the chemolithoautotrophic bacterium Oligotropha carboxidovorans OM5T." Paul D., Bridges S., Burgess S.C., Dandass Y., Lawrence M.L. J. Bacteriol. 190:5531-5532(2008) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 49405 / DSM 1227 / OM5 [Mississippi] and OM5 EMBL ACI94021.1.
[2]	"Complete Genome Sequences of the Chemolithoautotrophic Oligotropha carboxidovorans Strains OM4 and OM5." Volland S., Rachinger M., Strittmatter A., Daniel R., Gottschalk G., Meyer O. J. Bacteriol. 193:5043-5043(2011) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 49405 / DSM 1227 / OM5 and OM5 EMBL AEI05889.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001196 Genomic DNA. Translation: ACI94021.1. CP002826 Genomic DNA. Translation: AEI05889.1.
RefSeq	YP_002289886.1. NC_011386.1. YP_004632130.1. NC_015684.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	504832.OCAR_6912.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACI94021; ACI94021; OCAR_6912. AEI05889; AEI05889; OCA5_c11710.
GeneID	10846303. 6992393.
KEGG	oca:OCAR_6912. ocg:OCA5_c11710.
PATRIC	22807631. VBIOliCar134280_2764.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG3285.
HOGENOM	HOG000222509.
KO	K01971.
OMA	LVAECEF.
ProtClustDB	PRK05972.
Enzyme and pathway databases
BioCyc	OCAR504832:GJPZ-1171-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR014146. DNA_pol_LigD_ligase_dom. IPR014144. LigD_PE_domain. IPR014145. LigD_pol. IPR012340. NA-bd_OB-fold. IPR014143. NHEJ_ligase_prk. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF13298. LigD_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR02777. LigD_PE_dom. 1 hit. TIGR02778. ligD_pol. 1 hit. TIGR02779. NHEJ_ligase_lig. 1 hit. TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITE	PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B6JFK1_OLICO

Accession

Primary (citable) accession number: B6JFK1

Entry history

Integrated into UniProtKB/TrEMBL:	December 16, 2008
Last sequence update:	December 16, 2008
Last modified:	May 1, 2013
This is version 32 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)