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B6JFK1

- B6JFK1_OLICO

UniProt

B6JFK1 - B6JFK1_OLICO

Protein
Submitted name:

ATP dependent DNA ligase

Gene

OCA5_c11710

Organism
Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 43 (01 Oct 2014)
      Sequence version 1 (16 Dec 2008)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciOCAR504832:GJPZ-1171-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP dependent DNA ligaseImported
    Submitted name:
    Putative ATP-dependent DNA ligaseImported
    Gene namesi
    Ordered Locus Names:OCA5_c11710Imported, OCAR_6912Imported
    OrganismiOligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5)Imported
    Taxonomic identifieri504832 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeOligotropha
    ProteomesiUP000001678: Chromosome, UP000007730: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi504832.OCAR_6912.

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG3285.
    HOGENOMiHOG000222509.
    KOiK01971.
    OMAiNGLPDFQ.
    OrthoDBiEOG661H49.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    B6JFK1-1 [UniParc]FASTAAdd to Basket

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    MTRKKLSVYQ TKRDFTKTAE PSGAAKVTRG KLPRFVIQKH DATRLHYDLR    50
    LEIDGIFKSW AVTRGPSLDP KDKRLAVEVE DHPLDYGDFE GTIPKGQYGG 100
    GTVMLWDRGF WHSDDPAGGL KKGDLKFTLE GKKLHGEWVL VRMRHDRTGG 150
    KRTNWLLIKH RDEAAREGED ILDQDRSVAS GRTMEQIAQG KGRGPTPFMT 200
    AKGNAKPSRS KADRVWQSNQ GTAAALRAKS VAKTKTLAKP VQAAVRKVDH 250
    LPEFIAPQLC KSVARPSDGA DWIHEIKFDG YRMQLHIQGG KVHLRTRKGL 300
    DWTDKFPAIA KAAAKLPECI IDGEIVALDH EGHPSFASLQ AALSDGDTDE 350
    LIFFAFDLLF DKDSDLRRLP LTERKARLEQ LLDRQSKTSV IRYVAHFDTG 400
    GDAVLKSACR LALEGIISKR RDALYHSGRT ESWTKAKCRA GHEVVIGGWK 450
    TTAGKFRSLM VGVPHEDHLA YVGIVGTGYG QAVVKRIMPE LKKVASTTNP 500
    FGGKNAPRKT TGVHWVKPEL VAEIEFAGWT GDNMVRQAAF KGLRKDKSAD 550
    EVQVDEPVVT PIAEPAPRKT NTKANTKTRA KAATRTSSSG NAVVMGLTIS 600
    KPDKPLWPDD GKGEPVTKLD LARYMETMGE YLLPHIEGRP CSIIRAPDGI 650
    EGEKFFQRHA TAGMSNLIDQ VRVSGDRKPY IQIDRIEGLV AAAQIGGVEF 700
    HPWNCAPNEP DVPGRLVFDL DPAPGVNFTD VITAARDLHD RLSSLGLESF 750
    CKTTGGKGLH VVTPLKDAKK DRIDWKAAKA FAQAVCQAMA ADAPERYLIN 800
    MSKKKREGKI FLDYLRNDRM STAVAPFSPR GRDFAPVAWP ITWAQARTGL 850
    DPLKFTLRTV PALVKTSKAW AGYDRAARSL KDAIRKMGG 889
    Length:889
    Mass (Da):98,231
    Last modified:December 16, 2008 - v1
    Checksum:i7ACC5D10DBF384F7
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001196 Genomic DNA. Translation: ACI94021.1.
    CP002826 Genomic DNA. Translation: AEI05889.1.
    RefSeqiWP_012564047.1. NC_015684.1.
    YP_002289886.1. NC_011386.1.
    YP_004632130.1. NC_015684.1.

    Genome annotation databases

    EnsemblBacteriaiACI94021; ACI94021; OCAR_6912.
    AEI05889; AEI05889; OCA5_c11710.
    GeneIDi10846303.
    6992393.
    KEGGioca:OCAR_6912.
    ocg:OCA5_c11710.
    PATRICi22807631. VBIOliCar134280_2764.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001196 Genomic DNA. Translation: ACI94021.1 .
    CP002826 Genomic DNA. Translation: AEI05889.1 .
    RefSeqi WP_012564047.1. NC_015684.1.
    YP_002289886.1. NC_011386.1.
    YP_004632130.1. NC_015684.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 504832.OCAR_6912.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACI94021 ; ACI94021 ; OCAR_6912 .
    AEI05889 ; AEI05889 ; OCA5_c11710 .
    GeneIDi 10846303.
    6992393.
    KEGGi oca:OCAR_6912.
    ocg:OCA5_c11710.
    PATRICi 22807631. VBIOliCar134280_2764.

    Phylogenomic databases

    eggNOGi COG3285.
    HOGENOMi HOG000222509.
    KOi K01971.
    OMAi NGLPDFQ.
    OrthoDBi EOG661H49.

    Enzyme and pathway databases

    BioCyci OCAR504832:GJPZ-1171-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome sequence of the chemolithoautotrophic bacterium Oligotropha carboxidovorans OM5T."
      Paul D., Bridges S., Burgess S.C., Dandass Y., Lawrence M.L.
      J. Bacteriol. 190:5531-5532(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 49405 / DSM 1227 / OM5 and OM5Imported.
    2. "Complete genome sequences of the chemolithoautotrophic Oligotropha carboxidovorans strains OM4 and OM5."
      Volland S., Rachinger M., Strittmatter A., Daniel R., Gottschalk G., Meyer O.
      J. Bacteriol. 193:5043-5043(2011) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 49405 / DSM 1227 / OM5Imported, ATCC 49405 / DSM 1227 / OM5 [Mississippi]Imported and OM5Imported.

    Entry informationi

    Entry nameiB6JFK1_OLICO
    AccessioniPrimary (citable) accession number: B6JFK1
    Entry historyi
    Integrated into UniProtKB/TrEMBL: December 16, 2008
    Last sequence update: December 16, 2008
    Last modified: October 1, 2014
    This is version 43 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3