Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

B6JFK1

- B6JFK1_OLICO

UniProt

B6JFK1 - B6JFK1_OLICO

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein
Submitted name:

ATP dependent DNA ligase

Gene

OCA5_c11710

Organism
Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciOCAR504832:GJPZ-1171-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Submitted name:
Putative ATP-dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:OCA5_c11710Imported, OCAR_6912Imported
OrganismiOligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5)Imported
Taxonomic identifieri504832 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeOligotropha
ProteomesiUP000001678: Chromosome, UP000007730: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi504832.OCAR_6912.

Structurei

3D structure databases

ProteinModelPortaliB6JFK1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiNGLPDFQ.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B6JFK1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MTRKKLSVYQ TKRDFTKTAE PSGAAKVTRG KLPRFVIQKH DATRLHYDLR
60 70 80 90 100
LEIDGIFKSW AVTRGPSLDP KDKRLAVEVE DHPLDYGDFE GTIPKGQYGG
110 120 130 140 150
GTVMLWDRGF WHSDDPAGGL KKGDLKFTLE GKKLHGEWVL VRMRHDRTGG
160 170 180 190 200
KRTNWLLIKH RDEAAREGED ILDQDRSVAS GRTMEQIAQG KGRGPTPFMT
210 220 230 240 250
AKGNAKPSRS KADRVWQSNQ GTAAALRAKS VAKTKTLAKP VQAAVRKVDH
260 270 280 290 300
LPEFIAPQLC KSVARPSDGA DWIHEIKFDG YRMQLHIQGG KVHLRTRKGL
310 320 330 340 350
DWTDKFPAIA KAAAKLPECI IDGEIVALDH EGHPSFASLQ AALSDGDTDE
360 370 380 390 400
LIFFAFDLLF DKDSDLRRLP LTERKARLEQ LLDRQSKTSV IRYVAHFDTG
410 420 430 440 450
GDAVLKSACR LALEGIISKR RDALYHSGRT ESWTKAKCRA GHEVVIGGWK
460 470 480 490 500
TTAGKFRSLM VGVPHEDHLA YVGIVGTGYG QAVVKRIMPE LKKVASTTNP
510 520 530 540 550
FGGKNAPRKT TGVHWVKPEL VAEIEFAGWT GDNMVRQAAF KGLRKDKSAD
560 570 580 590 600
EVQVDEPVVT PIAEPAPRKT NTKANTKTRA KAATRTSSSG NAVVMGLTIS
610 620 630 640 650
KPDKPLWPDD GKGEPVTKLD LARYMETMGE YLLPHIEGRP CSIIRAPDGI
660 670 680 690 700
EGEKFFQRHA TAGMSNLIDQ VRVSGDRKPY IQIDRIEGLV AAAQIGGVEF
710 720 730 740 750
HPWNCAPNEP DVPGRLVFDL DPAPGVNFTD VITAARDLHD RLSSLGLESF
760 770 780 790 800
CKTTGGKGLH VVTPLKDAKK DRIDWKAAKA FAQAVCQAMA ADAPERYLIN
810 820 830 840 850
MSKKKREGKI FLDYLRNDRM STAVAPFSPR GRDFAPVAWP ITWAQARTGL
860 870 880
DPLKFTLRTV PALVKTSKAW AGYDRAARSL KDAIRKMGG
Length:889
Mass (Da):98,231
Last modified:December 16, 2008 - v1
Checksum:i7ACC5D10DBF384F7
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001196 Genomic DNA. Translation: ACI94021.1.
CP002826 Genomic DNA. Translation: AEI05889.1.
RefSeqiYP_002289886.1. NC_011386.1.
YP_004632130.1. NC_015684.1.

Genome annotation databases

EnsemblBacteriaiACI94021; ACI94021; OCAR_6912.
AEI05889; AEI05889; OCA5_c11710.
GeneIDi10846303.
6992393.
KEGGioca:OCAR_6912.
ocg:OCA5_c11710.
PATRICi22807631. VBIOliCar134280_2764.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001196 Genomic DNA. Translation: ACI94021.1 .
CP002826 Genomic DNA. Translation: AEI05889.1 .
RefSeqi YP_002289886.1. NC_011386.1.
YP_004632130.1. NC_015684.1.

3D structure databases

ProteinModelPortali B6JFK1.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 504832.OCAR_6912.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACI94021 ; ACI94021 ; OCAR_6912 .
AEI05889 ; AEI05889 ; OCA5_c11710 .
GeneIDi 10846303.
6992393.
KEGGi oca:OCAR_6912.
ocg:OCA5_c11710.
PATRICi 22807631. VBIOliCar134280_2764.

Phylogenomic databases

eggNOGi COG3285.
HOGENOMi HOG000222509.
KOi K01971.
OMAi NGLPDFQ.
OrthoDBi EOG661H49.

Enzyme and pathway databases

BioCyci OCAR504832:GJPZ-1171-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Genome sequence of the chemolithoautotrophic bacterium Oligotropha carboxidovorans OM5T."
    Paul D., Bridges S., Burgess S.C., Dandass Y., Lawrence M.L.
    J. Bacteriol. 190:5531-5532(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 49405 / DSM 1227 / OM5 and OM5Imported.
  2. "Complete genome sequences of the chemolithoautotrophic Oligotropha carboxidovorans strains OM4 and OM5."
    Volland S., Rachinger M., Strittmatter A., Daniel R., Gottschalk G., Meyer O.
    J. Bacteriol. 193:5043-5043(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 49405 / DSM 1227 / OM5Imported, ATCC 49405 / DSM 1227 / OM5 [Mississippi]Imported and OM5Imported.

Entry informationi

Entry nameiB6JFK1_OLICO
AccessioniPrimary (citable) accession number: B6JFK1
Entry historyi
Integrated into UniProtKB/TrEMBL: December 16, 2008
Last sequence update: December 16, 2008
Last modified: October 29, 2014
This is version 44 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3