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B6JFK1 (B6JFK1_OLICO) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 41. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names

Putative ATP-dependent DNA ligase EMBL AEI05889.1
Gene names
Ordered Locus Names:OCA5_c11710 EMBL AEI05889.1, OCAR_6912 EMBL ACI94021.1
OrganismOligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) [Complete proteome] [HAMAP] EMBL ACI94021.1
Taxonomic identifier504832 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeOligotropha

Protein attributes

Sequence length889 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL ACI94021.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
B6JFK1 [UniParc].

Last modified December 16, 2008. Version 1.
Checksum: 7ACC5D10DBF384F7

FASTA88998,231
        10         20         30         40         50         60 
MTRKKLSVYQ TKRDFTKTAE PSGAAKVTRG KLPRFVIQKH DATRLHYDLR LEIDGIFKSW 

        70         80         90        100        110        120 
AVTRGPSLDP KDKRLAVEVE DHPLDYGDFE GTIPKGQYGG GTVMLWDRGF WHSDDPAGGL 

       130        140        150        160        170        180 
KKGDLKFTLE GKKLHGEWVL VRMRHDRTGG KRTNWLLIKH RDEAAREGED ILDQDRSVAS 

       190        200        210        220        230        240 
GRTMEQIAQG KGRGPTPFMT AKGNAKPSRS KADRVWQSNQ GTAAALRAKS VAKTKTLAKP 

       250        260        270        280        290        300 
VQAAVRKVDH LPEFIAPQLC KSVARPSDGA DWIHEIKFDG YRMQLHIQGG KVHLRTRKGL 

       310        320        330        340        350        360 
DWTDKFPAIA KAAAKLPECI IDGEIVALDH EGHPSFASLQ AALSDGDTDE LIFFAFDLLF 

       370        380        390        400        410        420 
DKDSDLRRLP LTERKARLEQ LLDRQSKTSV IRYVAHFDTG GDAVLKSACR LALEGIISKR 

       430        440        450        460        470        480 
RDALYHSGRT ESWTKAKCRA GHEVVIGGWK TTAGKFRSLM VGVPHEDHLA YVGIVGTGYG 

       490        500        510        520        530        540 
QAVVKRIMPE LKKVASTTNP FGGKNAPRKT TGVHWVKPEL VAEIEFAGWT GDNMVRQAAF 

       550        560        570        580        590        600 
KGLRKDKSAD EVQVDEPVVT PIAEPAPRKT NTKANTKTRA KAATRTSSSG NAVVMGLTIS 

       610        620        630        640        650        660 
KPDKPLWPDD GKGEPVTKLD LARYMETMGE YLLPHIEGRP CSIIRAPDGI EGEKFFQRHA 

       670        680        690        700        710        720 
TAGMSNLIDQ VRVSGDRKPY IQIDRIEGLV AAAQIGGVEF HPWNCAPNEP DVPGRLVFDL 

       730        740        750        760        770        780 
DPAPGVNFTD VITAARDLHD RLSSLGLESF CKTTGGKGLH VVTPLKDAKK DRIDWKAAKA 

       790        800        810        820        830        840 
FAQAVCQAMA ADAPERYLIN MSKKKREGKI FLDYLRNDRM STAVAPFSPR GRDFAPVAWP 

       850        860        870        880 
ITWAQARTGL DPLKFTLRTV PALVKTSKAW AGYDRAARSL KDAIRKMGG 

« Hide

References

[1]"Genome sequence of the chemolithoautotrophic bacterium Oligotropha carboxidovorans OM5T."
Paul D., Bridges S., Burgess S.C., Dandass Y., Lawrence M.L.
J. Bacteriol. 190:5531-5532(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 49405 / DSM 1227 / OM5 [Mississippi] and OM5 EMBL ACI94021.1.
[2]"Complete Genome Sequences of the Chemolithoautotrophic Oligotropha carboxidovorans Strains OM4 and OM5."
Volland S., Rachinger M., Strittmatter A., Daniel R., Gottschalk G., Meyer O.
J. Bacteriol. 193:5043-5043(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 49405 / DSM 1227 / OM5 and OM5 EMBL AEI05889.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001196 Genomic DNA. Translation: ACI94021.1.
CP002826 Genomic DNA. Translation: AEI05889.1.
RefSeqYP_002289886.1. NC_011386.1.
YP_004632130.1. NC_015684.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING504832.OCAR_6912.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACI94021; ACI94021; OCAR_6912.
AEI05889; AEI05889; OCA5_c11710.
GeneID10846303.
6992393.
KEGGoca:OCAR_6912.
ocg:OCA5_c11710.
PATRIC22807631. VBIOliCar134280_2764.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG3285.
HOGENOMHOG000222509.
KOK01971.
OMANGLPDFQ.
OrthoDBEOG661H49.

Enzyme and pathway databases

BioCycOCAR504832:GJPZ-1171-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB6JFK1_OLICO
AccessionPrimary (citable) accession number: B6JFK1
Entry history
Integrated into UniProtKB/TrEMBL: December 16, 2008
Last sequence update: December 16, 2008
Last modified: July 9, 2014
This is version 41 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)