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Protein
Submitted name:

Putative ATP-dependent DNA ligase

Gene

OCA5_c11710

Organism
Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciOCAR504832:GJPZ-1171-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Putative ATP-dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:OCA5_c11710Imported
OrganismiOligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5)Imported
Taxonomic identifieri504832 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeOligotropha
ProteomesiUP000007730 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi504832.OCA5_c11710.

Structurei

3D structure databases

ProteinModelPortaliB6JFK1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiLELHPWN.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B6JFK1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTRKKLSVYQ TKRDFTKTAE PSGAAKVTRG KLPRFVIQKH DATRLHYDLR
60 70 80 90 100
LEIDGIFKSW AVTRGPSLDP KDKRLAVEVE DHPLDYGDFE GTIPKGQYGG
110 120 130 140 150
GTVMLWDRGF WHSDDPAGGL KKGDLKFTLE GKKLHGEWVL VRMRHDRTGG
160 170 180 190 200
KRTNWLLIKH RDEAAREGED ILDQDRSVAS GRTMEQIAQG KGRGPTPFMT
210 220 230 240 250
AKGNAKPSRS KADRVWQSNQ GTAAALRAKS VAKTKTLAKP VQAAVRKVDH
260 270 280 290 300
LPEFIAPQLC KSVARPSDGA DWIHEIKFDG YRMQLHIQGG KVHLRTRKGL
310 320 330 340 350
DWTDKFPAIA KAAAKLPECI IDGEIVALDH EGHPSFASLQ AALSDGDTDE
360 370 380 390 400
LIFFAFDLLF DKDSDLRRLP LTERKARLEQ LLDRQSKTSV IRYVAHFDTG
410 420 430 440 450
GDAVLKSACR LALEGIISKR RDALYHSGRT ESWTKAKCRA GHEVVIGGWK
460 470 480 490 500
TTAGKFRSLM VGVPHEDHLA YVGIVGTGYG QAVVKRIMPE LKKVASTTNP
510 520 530 540 550
FGGKNAPRKT TGVHWVKPEL VAEIEFAGWT GDNMVRQAAF KGLRKDKSAD
560 570 580 590 600
EVQVDEPVVT PIAEPAPRKT NTKANTKTRA KAATRTSSSG NAVVMGLTIS
610 620 630 640 650
KPDKPLWPDD GKGEPVTKLD LARYMETMGE YLLPHIEGRP CSIIRAPDGI
660 670 680 690 700
EGEKFFQRHA TAGMSNLIDQ VRVSGDRKPY IQIDRIEGLV AAAQIGGVEF
710 720 730 740 750
HPWNCAPNEP DVPGRLVFDL DPAPGVNFTD VITAARDLHD RLSSLGLESF
760 770 780 790 800
CKTTGGKGLH VVTPLKDAKK DRIDWKAAKA FAQAVCQAMA ADAPERYLIN
810 820 830 840 850
MSKKKREGKI FLDYLRNDRM STAVAPFSPR GRDFAPVAWP ITWAQARTGL
860 870 880
DPLKFTLRTV PALVKTSKAW AGYDRAARSL KDAIRKMGG
Length:889
Mass (Da):98,231
Last modified:December 16, 2008 - v1
Checksum:i7ACC5D10DBF384F7
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002826 Genomic DNA. Translation: AEI05889.1.
RefSeqiWP_012564047.1. NC_015684.1.
YP_002289886.1. NC_011386.1.
YP_004632130.1. NC_015684.1.

Genome annotation databases

EnsemblBacteriaiACI94021; ACI94021; OCAR_6912.
AEI05889; AEI05889; OCA5_c11710.
KEGGioca:OCAR_6912.
ocg:OCA5_c11710.
PATRICi22807631. VBIOliCar134280_2764.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002826 Genomic DNA. Translation: AEI05889.1.
RefSeqiWP_012564047.1. NC_015684.1.
YP_002289886.1. NC_011386.1.
YP_004632130.1. NC_015684.1.

3D structure databases

ProteinModelPortaliB6JFK1.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi504832.OCA5_c11710.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACI94021; ACI94021; OCAR_6912.
AEI05889; AEI05889; OCA5_c11710.
KEGGioca:OCAR_6912.
ocg:OCA5_c11710.
PATRICi22807631. VBIOliCar134280_2764.

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiLELHPWN.
OrthoDBiEOG661H49.

Enzyme and pathway databases

BioCyciOCAR504832:GJPZ-1171-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete genome sequences of the chemolithoautotrophic Oligotropha carboxidovorans strains OM4 and OM5."
    Volland S., Rachinger M., Strittmatter A., Daniel R., Gottschalk G., Meyer O.
    J. Bacteriol. 193:5043-5043(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 49405 / DSM 1227 / OM5Imported.

Entry informationi

Entry nameiB6JFK1_OLICO
AccessioniPrimary (citable) accession number: B6JFK1
Entry historyi
Integrated into UniProtKB/TrEMBL: December 16, 2008
Last sequence update: December 16, 2008
Last modified: June 24, 2015
This is version 50 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.