B6JET5 (B6JET5_OLICO) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
50S ribosomal protein L23 RuleBase RU003935 HAMAP MF_01369

Gene names

Name:	rplW HAMAP MF_01369 EMBL ACI92807.1
Ordered Locus Names:	OCA5_c23280 EMBL AEI07028.1, OCAR_5679

Organism

Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) [Complete proteome] [HAMAP]

Taxonomic identifier

504832 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Bradyrhizobiaceae › Oligotropha

Protein attributes

Sequence length	99 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome By similarity. HAMAP MF_01369
Subunit structure	Part of the 50S ribosomal subunit. Contacts protein L29, and trigger factor when it is bound to the ribosome By similarity. HAMAP MF_01369
Sequence similarities	Belongs to the ribosomal protein L23P family. RuleBase RU003934 HAMAP MF_01369

Ontologies

Keywords
Ligand	RNA-binding rRNA-binding RuleBase RU003935 HAMAP MF_01369
Molecular function	Ribonucleoprotein Ribosomal protein RuleBase RU003934 HAMAP MF_01369 EMBL ACI92807.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	translation Inferred from electronic annotation. Source: HAMAP
Cellular component	ribosome Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	nucleotide binding Inferred from electronic annotation. Source: InterPro rRNA binding Inferred from electronic annotation. Source: HAMAP structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B6JET5 [UniParc]. Last modified December 16, 2008. Version 1. Checksum: C20C25FF56B52FE1	FASTA	99	10,922
	10 20 30 40 50 60 MSTQDPRHYD IIVAPVITEK ATTASEHNKV VFKVAAKATK PQIKEAVEKL FDVKVKGVNT 70 80 90 LVRKGKTKTF RGQFGSQSDT KRAVVTLEEG HRIDVTTGL

References

[1]	"Genome sequence of the chemolithoautotrophic bacterium Oligotropha carboxidovorans OM5T." Paul D., Bridges S., Burgess S.C., Dandass Y., Lawrence M.L. J. Bacteriol. 190:5531-5532(2008) [PubMed: 18539730] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 49405 / DSM 1227 / OM5 [Mississippi].
[2]	"Complete genome sequences of the chemolithoautotrophic Oligotropha carboxidovorans strains OM4 and OM5." Volland S., Rachinger M., Strittmatter A., Daniel R., Gottschalk G., Meyer O. J. Bacteriol. 193:5043-5043(2011) [PubMed: 21742883] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 49405 / DSM 1227 / OM5 and OM5 EMBL AEI07028.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001196 Genomic DNA. Translation: ACI92807.1. CP002826 Genomic DNA. Translation: AEI07028.1.
RefSeq	YP_002288672.1. NC_011386.1. YP_004633269.1. NC_015684.1.
3D structure databases
ProteinModelPortal	B6JET5.
ModBase	Search...
Protein-protein interaction databases
STRING	B6JET5.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	10847460. 6991824.
GenomeReviews	Gene locus OCAR_5679 in contig CP001196_GR.
KEGG	oca:OCAR_5679.
PATRIC	22805265. VBIOliCar134280_1597.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG439330.
OMA	WKKAYVS.
ProtClustDB	PRK05738.
Family and domain databases
HAMAP	MF_01369_B. Ribosomal_L23_B. [Tree]
InterPro	IPR012677. Nucleotide-bd_a/b_plait. IPR012678. Ribosomal_L23/L15e_core_dom. IPR001014. Ribosomal_L23/L25_CS. IPR013025. Ribosomal_L25/23. [Graphical view]
Gene3D	G3DSA:3.30.70.330. a_b_plait_nuc_bd. 1 hit.
KO	K02892.
Pfam	PF00276. Ribosomal_L23. 1 hit. [Graphical view]
SUPFAM	SSF54189. L23_L15e_core. 1 hit.
PROSITE	PS00050. RIBOSOMAL_L23. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B6JET5_OLICO

Accession

Primary (citable) accession number: B6JET5

Entry history

Integrated into UniProtKB/TrEMBL:	December 16, 2008
Last sequence update:	December 16, 2008
Last modified:	January 25, 2012
This is version 20 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)