B6JDD6 (B6JDD6_OLICO) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
5-aminolevulinate synthase HemA EMBL AEI07920.1
EC=2.3.1.37 EMBL AEI07920.1

Submitted name:
5-aminolevulinic acid synthase EMBL ACI91848.1
EC=2.3.1.37 EMBL ACI91848.1

Gene names

Name:	hemA EMBL ACI91848.1
Ordered Locus Names:	OCA5_c32440 EMBL AEI07920.1, OCAR_4706

Organism

Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) [Complete proteome] [HAMAP]

Taxonomic identifier

504832 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Bradyrhizobiaceae › Oligotropha

Protein attributes

Sequence length	408 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Cofactor	Pyridoxal phosphate By similarity. RuleBase RU003693
Sequence similarities	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. RuleBase RU003693

Ontologies

Keywords
Ligand	Pyridoxal phosphate RuleBase RU003693
Molecular function	Acyltransferase EMBL ACI91848.1 Transferase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	tetrapyrrole biosynthetic process Inferred from electronic annotation. Source: InterPro
Molecular function	5-aminolevulinate synthase activity Inferred from electronic annotation. Source: EC pyridoxal phosphate binding Inferred from electronic annotation. Source: InterPro transferase activity, transferring nitrogenous groups Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B6JDD6 [UniParc]. Last modified December 16, 2008. Version 1. Checksum: 5FDD8211CBE50AD8	FASTA	408	44,557
	10 20 30 40 50 60 MDYSSFFDTA LNRLHDERRY RVFADLERIA GRFPLAVWHT PQGERSVVMW CSNDYLGMGQ 70 80 90 100 110 120 HPKVVGAMVE TATRAGTGAG GTRNIAGNNH SLIQLEHELA DLHGKEAALV FTSGYVSNQT 130 140 150 160 170 180 GISTLAKLIP NCLILSDALN HNSMIEGIRQ SGCERIVFRH NDMGHLEELL RAHPGRPTLI 190 200 210 220 230 240 VCESLYSMDG DIAPLGKVCD LAEKYGAMTY VDEVHAVGMY GARGAGIAER DGVMHRIDIL 250 260 270 280 290 300 EGTLAKAFGC LGGYIAGKKN VIDAIRSHAP GFIFTTALPP AVCSAATAAI RHLKTSQWER 310 320 330 340 350 360 TRQQDRAARV KAILIAAGIP VMSSDTHIVP VFVGDPELCK KASDLLLEEH GIYIQPINYP 370 380 390 400 TVPKGTERLR ITPSPYHEDA LIDQLAEAMV AVWEQLGLRL NEKSLAAE

References

[1]	"Genome sequence of the chemolithoautotrophic bacterium Oligotropha carboxidovorans OM5T." Paul D., Bridges S., Burgess S.C., Dandass Y., Lawrence M.L. J. Bacteriol. 190:5531-5532(2008) [PubMed: 18539730] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 49405 / DSM 1227 / OM5 [Mississippi].
[2]	"Complete genome sequences of the chemolithoautotrophic Oligotropha carboxidovorans strains OM4 and OM5." Volland S., Rachinger M., Strittmatter A., Daniel R., Gottschalk G., Meyer O. J. Bacteriol. 193:5043-5043(2011) [PubMed: 21742883] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 49405 / DSM 1227 / OM5 and OM5 EMBL AEI07920.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001196 Genomic DNA. Translation: ACI91848.1. CP002826 Genomic DNA. Translation: AEI07920.1.
RefSeq	YP_002287713.1. NC_011386.1. YP_004634161.1. NC_015684.1.
3D structure databases
ProteinModelPortal	B6JDD6.
SMR	B6JDD6. Positions 2-393.
ModBase	Search...
Protein-protein interaction databases
STRING	B6JDD6.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	10848374. 6993456.
GenomeReviews	Gene locus OCAR_4706 in contig CP001196_GR.
KEGG	oca:OCAR_4706.
PATRIC	22803383. VBIOliCar134280_0674.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG649839.
OMA	HLKESNE.
ProtClustDB	PRK09064.
Family and domain databases
InterPro	IPR010961. 4pyrrol_synth_NH2levulA_synth. IPR001917. Aminotrans_II_pyridoxalP_BS. IPR004839. Aminotransferase_I/II. IPR015424. PyrdxlP-dep_Trfase_major_dom. IPR015421. PyrdxlP-dep_Trfase_major_sub1. IPR015422. PyrdxlP-dep_Trfase_major_sub2. [Graphical view]
Gene3D	G3DSA:3.40.640.10. PyrdxlP-dep_Trfase_major_sub1. 1 hit. G3DSA:3.90.1150.10. PyrdxlP-dep_Trfase_major_sub2. 1 hit.
KO	K00643.
Pfam	PF00155. Aminotran_1_2. 1 hit. [Graphical view]
SUPFAM	SSF53383. PyrdxlP-dep_Trfase_major. 1 hit.
TIGRFAMs	TIGR01821. 5aminolev_synth. 1 hit.
PROSITE	PS00599. AA_TRANSFER_CLASS_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B6JDD6_OLICO

Accession

Primary (citable) accession number: B6JDD6

Entry history

Integrated into UniProtKB/TrEMBL:	December 16, 2008
Last sequence update:	December 16, 2008
Last modified:	January 25, 2012
This is version 24 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)