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B6JDB6 (B6JDB6_OLICO) Unreviewed, UniProtKB/TrEMBL

Last modified May 29, 2013. Version 33. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Cytochrome c oxidase subunit 1 EMBL AEI07939.1
EC=1.9.3.1 EMBL AEI07939.1
Submitted name:
Cytochrome c oxidase, subunit I EMBL ACI91828.1
EC=1.9.3.1 EMBL ACI91828.1
Gene names
Name:ctaD EMBL ACI91828.1
Synonyms:coxA EMBL AEI07939.1
Ordered Locus Names:OCA5_c32630 EMBL AEI07939.1, OCAR_4686 EMBL ACI91828.1
OrganismOligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) [Complete proteome] [HAMAP] EMBL ACI91828.1
Taxonomic identifier504832 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Bradyrhizobiaceae › Oligotropha ›

Protein attributes

Sequence length541 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the heme-copper respiratory oxidase family. RuleBase RU000370

Sequences

Sequence LengthMass (Da)Tools
B6JDB6 [UniParc].

Last modified December 16, 2008. Version 1.
Checksum: 04D71A8881BD47DA

FASTA54159,364
        10         20         30         40         50         60 
MATSAATSAH TDHAHDDHAH DHPTGWRRYL FSTNHKDIGT MYLIFAVVAG LIGGAMSVAI 

        70         80         90        100        110        120 
RIELMYPGVQ LFHEAHTFNV FVSNHGLIMI FFALMPALIG GFGNWFVPLM IGAPDMAFPR 

       130        140        150        160        170        180 
MNNISFWLLP SSFALLILSA FVEGEPGSLG AGTGWTMYAP LSTSGHPGPA VDFVILSMHI 

       190        200        210        220        230        240 
AGASSILGAI NFITTIFNMR APGMTMHKMP LFVWSVLVTA FMLLLSLPVL AGGITMLLTD 

       250        260        270        280        290        300 
RNFGTAFFAA DGGGDPVLYQ HLFWFFGHPE VYIMILPGFG IISHVTSTFS RKPIFGYLGM 

       310        320        330        340        350        360 
VYAMVAIGGI GFVVWAHHMY TVGMSASAQA YFVAASMVIA VPTGVKIFSW IATMWGGSIE 

       370        380        390        400        410        420 
FKAPMLWAIG FIFLFTVGGV TGVVLANAGV DRVLQDTYYV IAHFHYVLSL GAVFAIFAGW 

       430        440        450        460        470        480 
YYWFPKMFGY MYNETIAKAH FWLMFIGVNV LFFPMHFLGL SGMPRRYVDY PDAFAGWNLV 

       490        500        510        520        530        540 
ASIGSYISAF GVLVFLYGVV EAFARKIPAP NNPWGPGATT LEWTLTSPPP FHQFEVLPRI 


R

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References

[1]"Genome sequence of the chemolithoautotrophic bacterium Oligotropha carboxidovorans OM5T."
Paul D., Bridges S., Burgess S.C., Dandass Y., Lawrence M.L.
J. Bacteriol. 190:5531-5532(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 49405 / DSM 1227 / OM5 [Mississippi] and OM5 EMBL ACI91828.1.
[2]"Complete Genome Sequences of the Chemolithoautotrophic Oligotropha carboxidovorans Strains OM4 and OM5."
Volland S., Rachinger M., Strittmatter A., Daniel R., Gottschalk G., Meyer O.
J. Bacteriol. 193:5043-5043(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 49405 / DSM 1227 / OM5 and OM5 EMBL AEI07939.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001196 Genomic DNA. Translation: ACI91828.1.
CP002826 Genomic DNA. Translation: AEI07939.1.
RefSeqYP_002287693.1. NC_011386.1.
YP_004634180.1. NC_015684.1.

3D structure databases

SMRB6JDB6. Positions 28-539.
ModBaseSearch...

Protein-protein interaction databases

STRING504832.OCAR_4686.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACI91828; ACI91828; OCAR_4686.
AEI07939; AEI07939; OCA5_c32630.
GeneID10848393.
6993436.
KEGGoca:OCAR_4686.
ocg:OCA5_c32630.
PATRIC22803345. VBIOliCar134280_0655.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0843.
HOGENOMHOG000085275.
KOK02274.
OMATVTMVLT.
ProtClustDBCLSK818454.

Enzyme and pathway databases

BioCycOCAR504832:GJPZ-3261-MONOMER.

Family and domain databases

Gene3D1.20.210.10. 1 hit.
InterProIPR000883. Cyt_c_Oxase_su1.
IPR023615. Cyt_c_Oxase_su1_BS.
IPR023616. Cyt_c_Oxase_su1_dom.
IPR014241. Cyt_c_oxidase_su1_bac.
[Graphical view]
PANTHERPTHR10422. PTHR10422. 1 hit.
PfamPF00115. COX1. 1 hit.
[Graphical view]
PRINTSPR01165. CYCOXIDASEI.
SUPFAMSSF81442. COX1. 1 hit.
TIGRFAMsTIGR02891. CtaD_CoxA. 1 hit.
PROSITEPS50855. COX1. 1 hit.
PS00077. COX1_CUB. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB6JDB6_OLICO
AccessionPrimary (citable) accession number: B6JDB6
Entry history
Integrated into UniProtKB/TrEMBL: December 16, 2008
Last sequence update: December 16, 2008
Last modified: May 29, 2013
This is version 33 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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