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Protein
Submitted name:

ATP-dependent DNA ligase Lig

Gene

lig

Organism
Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciOCAR504832:GJPZ-2796-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligase LigImported (EC:6.5.1.1Imported)
Gene namesi
Name:ligImported
Ordered Locus Names:OCA5_c27960Imported
OrganismiOligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5)Imported
Taxonomic identifieri504832 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeOligotropha
ProteomesiUP000007730 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi504832.OCA5_c27960.

Structurei

3D structure databases

ProteinModelPortaliB6JC89.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000036007.
KOiK10747.
OMAiAAWAVYF.
OrthoDBiEOG6Q8HXT.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B6JC89-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNRFAHLLDR LAYEPGRNNK LRLITAYFRE VPDPDRGWAL AALTGALSFR
60 70 80 90 100
HAKPGLIRDL ITARTDPALF ALSYDYVGDL SETVALMWPS VHASTNGDAK
110 120 130 140 150
HSPTLTEIVT TLHTLGKTEI PAQLASWLDE LDETGRWALL KLVTGGLRIG
160 170 180 190 200
VSARLAKTAA AALGDKDPHE IELIWPGLAP PYLDLFAWLE GRAEKPINRD
210 220 230 240 250
PAPFRPVMLA HAIEDSDFAG LDPADFIAEW KWDGIRVQAV SGRKSEEHVL
260 270 280 290 300
ARLYSRSGED ITASFPDLVP SLRLPGAIDG ELLVLREGRV QSFNVLQQRL
310 320 330 340 350
NRKSVTPKLM KDYPIHLRAY DLLAEGEDDL RDLPFIDRRA RLERFIARLD
360 370 380 390 400
DPRIDLSPQV VFATWDDLTA ARANPSDAGA GDDADAVEGV MLKRRDALYL
410 420 430 440 450
PGRQRGQWWK WKHDPHVIDA VLMYAQRGHG KRSSYYSDYT FGVWTVGEGG
460 470 480 490 500
DELVPVGKAY FGFTDEELVQ IDRFVRRNTV EKFGPVRHVV HEPNKGLVLE
510 520 530 540 550
VAFEGLARSP RHKSGVAMRF PRISRLRWDK PPGEADRLET LKRLLKEDLA
560
SVVAEGLLGR RAG
Length:563
Mass (Da):63,106
Last modified:December 16, 2008 - v1
Checksum:i11802521D813060D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002826 Genomic DNA. Translation: AEI07489.1.
RefSeqiWP_012562335.1. NC_015684.1.

Genome annotation databases

EnsemblBacteriaiACI92305; ACI92305; OCAR_5172.
AEI07489; AEI07489; OCA5_c27960.
KEGGioca:OCAR_5172.
ocg:OCA5_c27960.
PATRICi22804283. VBIOliCar134280_1112.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002826 Genomic DNA. Translation: AEI07489.1.
RefSeqiWP_012562335.1. NC_015684.1.

3D structure databases

ProteinModelPortaliB6JC89.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi504832.OCA5_c27960.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACI92305; ACI92305; OCAR_5172.
AEI07489; AEI07489; OCA5_c27960.
KEGGioca:OCAR_5172.
ocg:OCA5_c27960.
PATRICi22804283. VBIOliCar134280_1112.

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000036007.
KOiK10747.
OMAiAAWAVYF.
OrthoDBiEOG6Q8HXT.

Enzyme and pathway databases

BioCyciOCAR504832:GJPZ-2796-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete genome sequences of the chemolithoautotrophic Oligotropha carboxidovorans strains OM4 and OM5."
    Volland S., Rachinger M., Strittmatter A., Daniel R., Gottschalk G., Meyer O.
    J. Bacteriol. 193:5043-5043(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 49405 / DSM 1227 / OM5Imported.

Entry informationi

Entry nameiB6JC89_OLICO
AccessioniPrimary (citable) accession number: B6JC89
Entry historyi
Integrated into UniProtKB/TrEMBL: December 16, 2008
Last sequence update: December 16, 2008
Last modified: July 22, 2015
This is version 51 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.