B6JC89 (B6JC89_OLICO) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP-dependent DNA ligase Lig EMBL AEI07489.1
EC=6.5.1.1 EMBL AEI07489.1

Submitted name:
DNA ligase EMBL ACI92305.1

Gene names

Name:	lig EMBL AEI07489.1
Ordered Locus Names:	OCA5_c27960 EMBL AEI07489.1, OCAR_5172 EMBL ACI92305.1

Organism

Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) [Complete proteome] [HAMAP] EMBL ACI92305.1

Taxonomic identifier

504832 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Bradyrhizobiaceae › Oligotropha › Oligotropha carboxidovorans

Protein attributes

Sequence length	563 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL ACI92305.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B6JC89 [UniParc]. Last modified December 16, 2008. Version 1. Checksum: 11802521D813060D	FASTA	563	63,106
	10 20 30 40 50 60 MNRFAHLLDR LAYEPGRNNK LRLITAYFRE VPDPDRGWAL AALTGALSFR HAKPGLIRDL 70 80 90 100 110 120 ITARTDPALF ALSYDYVGDL SETVALMWPS VHASTNGDAK HSPTLTEIVT TLHTLGKTEI 130 140 150 160 170 180 PAQLASWLDE LDETGRWALL KLVTGGLRIG VSARLAKTAA AALGDKDPHE IELIWPGLAP 190 200 210 220 230 240 PYLDLFAWLE GRAEKPINRD PAPFRPVMLA HAIEDSDFAG LDPADFIAEW KWDGIRVQAV 250 260 270 280 290 300 SGRKSEEHVL ARLYSRSGED ITASFPDLVP SLRLPGAIDG ELLVLREGRV QSFNVLQQRL 310 320 330 340 350 360 NRKSVTPKLM KDYPIHLRAY DLLAEGEDDL RDLPFIDRRA RLERFIARLD DPRIDLSPQV 370 380 390 400 410 420 VFATWDDLTA ARANPSDAGA GDDADAVEGV MLKRRDALYL PGRQRGQWWK WKHDPHVIDA 430 440 450 460 470 480 VLMYAQRGHG KRSSYYSDYT FGVWTVGEGG DELVPVGKAY FGFTDEELVQ IDRFVRRNTV 490 500 510 520 530 540 EKFGPVRHVV HEPNKGLVLE VAFEGLARSP RHKSGVAMRF PRISRLRWDK PPGEADRLET 550 560 LKRLLKEDLA SVVAEGLLGR RAG

References

[1]	"Genome sequence of the chemolithoautotrophic bacterium Oligotropha carboxidovorans OM5T." Paul D., Bridges S., Burgess S.C., Dandass Y., Lawrence M.L. J. Bacteriol. 190:5531-5532(2008) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 49405 / DSM 1227 / OM5 [Mississippi] and OM5 EMBL ACI92305.1.
[2]	"Complete Genome Sequences of the Chemolithoautotrophic Oligotropha carboxidovorans Strains OM4 and OM5." Volland S., Rachinger M., Strittmatter A., Daniel R., Gottschalk G., Meyer O. J. Bacteriol. 193:5043-5043(2011) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 49405 / DSM 1227 / OM5 and OM5 EMBL AEI07489.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001196 Genomic DNA. Translation: ACI92305.1. CP002826 Genomic DNA. Translation: AEI07489.1.
RefSeq	YP_002288170.1. NC_011386.1. YP_004633730.1. NC_015684.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	504832.OCAR_5172.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACI92305; ACI92305; OCAR_5172. AEI07489; AEI07489; OCA5_c27960.
GeneID	10847928. 6991160.
KEGG	oca:OCAR_5172. ocg:OCA5_c27960.
PATRIC	22804283. VBIOliCar134280_1112.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1793.
HOGENOM	HOG000036007.
KO	K01971.
OMA	AYDLLEW.
Enzyme and pathway databases
BioCyc	OCAR504832:GJPZ-2796-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR026333. ATP_dep_DNA_lig_pp_1105_fam. IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR012308. DNA_ligase_ATP-dep_N. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF04675. DNA_ligase_A_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR04120. DNA_lig_bact. 1 hit.
PROSITE	PS00697. DNA_LIGASE_A1. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B6JC89_OLICO

Accession

Primary (citable) accession number: B6JC89

Entry history

Integrated into UniProtKB/TrEMBL:	December 16, 2008
Last sequence update:	December 16, 2008
Last modified:	May 1, 2013
This is version 33 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)