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B6JC89

- B6JC89_OLICO

UniProt

B6JC89 - B6JC89_OLICO

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Protein
Submitted name:

ATP-dependent DNA ligase Lig

Gene

lig

Organism
Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciOCAR504832:GJPZ-2796-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligase LigImported (EC:6.5.1.1Imported)
Submitted name:
DNA ligaseImported
Gene namesi
Name:ligImported
Ordered Locus Names:OCA5_c27960Imported, OCAR_5172Imported
OrganismiOligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5)Imported
Taxonomic identifieri504832 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeOligotropha
ProteomesiUP000007730: Chromosome, UP000001678: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi504832.OCAR_5172.

Structurei

3D structure databases

ProteinModelPortaliB6JC89.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000036007.
KOiK01971.
OMAiNRHKSGV.
OrthoDBiEOG6Q8HXT.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B6JC89-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MNRFAHLLDR LAYEPGRNNK LRLITAYFRE VPDPDRGWAL AALTGALSFR
60 70 80 90 100
HAKPGLIRDL ITARTDPALF ALSYDYVGDL SETVALMWPS VHASTNGDAK
110 120 130 140 150
HSPTLTEIVT TLHTLGKTEI PAQLASWLDE LDETGRWALL KLVTGGLRIG
160 170 180 190 200
VSARLAKTAA AALGDKDPHE IELIWPGLAP PYLDLFAWLE GRAEKPINRD
210 220 230 240 250
PAPFRPVMLA HAIEDSDFAG LDPADFIAEW KWDGIRVQAV SGRKSEEHVL
260 270 280 290 300
ARLYSRSGED ITASFPDLVP SLRLPGAIDG ELLVLREGRV QSFNVLQQRL
310 320 330 340 350
NRKSVTPKLM KDYPIHLRAY DLLAEGEDDL RDLPFIDRRA RLERFIARLD
360 370 380 390 400
DPRIDLSPQV VFATWDDLTA ARANPSDAGA GDDADAVEGV MLKRRDALYL
410 420 430 440 450
PGRQRGQWWK WKHDPHVIDA VLMYAQRGHG KRSSYYSDYT FGVWTVGEGG
460 470 480 490 500
DELVPVGKAY FGFTDEELVQ IDRFVRRNTV EKFGPVRHVV HEPNKGLVLE
510 520 530 540 550
VAFEGLARSP RHKSGVAMRF PRISRLRWDK PPGEADRLET LKRLLKEDLA
560
SVVAEGLLGR RAG
Length:563
Mass (Da):63,106
Last modified:December 16, 2008 - v1
Checksum:i11802521D813060D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001196 Genomic DNA. Translation: ACI92305.1.
CP002826 Genomic DNA. Translation: AEI07489.1.
RefSeqiYP_002288170.1. NC_011386.1.
YP_004633730.1. NC_015684.1.

Genome annotation databases

EnsemblBacteriaiACI92305; ACI92305; OCAR_5172.
AEI07489; AEI07489; OCA5_c27960.
GeneIDi10847928.
6991160.
KEGGioca:OCAR_5172.
ocg:OCA5_c27960.
PATRICi22804283. VBIOliCar134280_1112.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001196 Genomic DNA. Translation: ACI92305.1 .
CP002826 Genomic DNA. Translation: AEI07489.1 .
RefSeqi YP_002288170.1. NC_011386.1.
YP_004633730.1. NC_015684.1.

3D structure databases

ProteinModelPortali B6JC89.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 504832.OCAR_5172.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACI92305 ; ACI92305 ; OCAR_5172 .
AEI07489 ; AEI07489 ; OCA5_c27960 .
GeneIDi 10847928.
6991160.
KEGGi oca:OCAR_5172.
ocg:OCA5_c27960.
PATRICi 22804283. VBIOliCar134280_1112.

Phylogenomic databases

eggNOGi COG1793.
HOGENOMi HOG000036007.
KOi K01971.
OMAi NRHKSGV.
OrthoDBi EOG6Q8HXT.

Enzyme and pathway databases

BioCyci OCAR504832:GJPZ-2796-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Genome sequence of the chemolithoautotrophic bacterium Oligotropha carboxidovorans OM5T."
    Paul D., Bridges S., Burgess S.C., Dandass Y., Lawrence M.L.
    J. Bacteriol. 190:5531-5532(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 49405 / DSM 1227 / OM5 and OM5Imported.
  2. "Complete genome sequences of the chemolithoautotrophic Oligotropha carboxidovorans strains OM4 and OM5."
    Volland S., Rachinger M., Strittmatter A., Daniel R., Gottschalk G., Meyer O.
    J. Bacteriol. 193:5043-5043(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 49405 / DSM 1227 / OM5Imported, ATCC 49405 / DSM 1227 / OM5 [Mississippi]Imported and OM5Imported.

Entry informationi

Entry nameiB6JC89_OLICO
AccessioniPrimary (citable) accession number: B6JC89
Entry historyi
Integrated into UniProtKB/TrEMBL: December 16, 2008
Last sequence update: December 16, 2008
Last modified: October 29, 2014
This is version 45 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3