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B6JC89

- B6JC89_OLICO

UniProt

B6JC89 - B6JC89_OLICO

Protein
Submitted name:

ATP-dependent DNA ligase Lig

Gene

lig

Organism
Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 44 (01 Oct 2014)
      Sequence version 1 (16 Dec 2008)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA binding Source: InterPro
    3. DNA ligase (ATP) activity Source: UniProtKB-EC

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciOCAR504832:GJPZ-2796-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP-dependent DNA ligase LigImported (EC:6.5.1.1Imported)
    Submitted name:
    DNA ligaseImported
    Gene namesi
    Name:ligImported
    Ordered Locus Names:OCA5_c27960Imported, OCAR_5172Imported
    OrganismiOligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5)Imported
    Taxonomic identifieri504832 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeOligotropha
    ProteomesiUP000007730: Chromosome, UP000001678: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi504832.OCAR_5172.

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG1793.
    HOGENOMiHOG000036007.
    KOiK01971.
    OMAiNRHKSGV.
    OrthoDBiEOG6Q8HXT.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    B6JC89-1 [UniParc]FASTAAdd to Basket

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    MNRFAHLLDR LAYEPGRNNK LRLITAYFRE VPDPDRGWAL AALTGALSFR    50
    HAKPGLIRDL ITARTDPALF ALSYDYVGDL SETVALMWPS VHASTNGDAK 100
    HSPTLTEIVT TLHTLGKTEI PAQLASWLDE LDETGRWALL KLVTGGLRIG 150
    VSARLAKTAA AALGDKDPHE IELIWPGLAP PYLDLFAWLE GRAEKPINRD 200
    PAPFRPVMLA HAIEDSDFAG LDPADFIAEW KWDGIRVQAV SGRKSEEHVL 250
    ARLYSRSGED ITASFPDLVP SLRLPGAIDG ELLVLREGRV QSFNVLQQRL 300
    NRKSVTPKLM KDYPIHLRAY DLLAEGEDDL RDLPFIDRRA RLERFIARLD 350
    DPRIDLSPQV VFATWDDLTA ARANPSDAGA GDDADAVEGV MLKRRDALYL 400
    PGRQRGQWWK WKHDPHVIDA VLMYAQRGHG KRSSYYSDYT FGVWTVGEGG 450
    DELVPVGKAY FGFTDEELVQ IDRFVRRNTV EKFGPVRHVV HEPNKGLVLE 500
    VAFEGLARSP RHKSGVAMRF PRISRLRWDK PPGEADRLET LKRLLKEDLA 550
    SVVAEGLLGR RAG 563
    Length:563
    Mass (Da):63,106
    Last modified:December 16, 2008 - v1
    Checksum:i11802521D813060D
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001196 Genomic DNA. Translation: ACI92305.1.
    CP002826 Genomic DNA. Translation: AEI07489.1.
    RefSeqiYP_002288170.1. NC_011386.1.
    YP_004633730.1. NC_015684.1.

    Genome annotation databases

    EnsemblBacteriaiACI92305; ACI92305; OCAR_5172.
    AEI07489; AEI07489; OCA5_c27960.
    GeneIDi10847928.
    6991160.
    KEGGioca:OCAR_5172.
    ocg:OCA5_c27960.
    PATRICi22804283. VBIOliCar134280_1112.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001196 Genomic DNA. Translation: ACI92305.1 .
    CP002826 Genomic DNA. Translation: AEI07489.1 .
    RefSeqi YP_002288170.1. NC_011386.1.
    YP_004633730.1. NC_015684.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 504832.OCAR_5172.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACI92305 ; ACI92305 ; OCAR_5172 .
    AEI07489 ; AEI07489 ; OCA5_c27960 .
    GeneIDi 10847928.
    6991160.
    KEGGi oca:OCAR_5172.
    ocg:OCA5_c27960.
    PATRICi 22804283. VBIOliCar134280_1112.

    Phylogenomic databases

    eggNOGi COG1793.
    HOGENOMi HOG000036007.
    KOi K01971.
    OMAi NRHKSGV.
    OrthoDBi EOG6Q8HXT.

    Enzyme and pathway databases

    BioCyci OCAR504832:GJPZ-2796-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome sequence of the chemolithoautotrophic bacterium Oligotropha carboxidovorans OM5T."
      Paul D., Bridges S., Burgess S.C., Dandass Y., Lawrence M.L.
      J. Bacteriol. 190:5531-5532(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 49405 / DSM 1227 / OM5 and OM5Imported.
    2. "Complete genome sequences of the chemolithoautotrophic Oligotropha carboxidovorans strains OM4 and OM5."
      Volland S., Rachinger M., Strittmatter A., Daniel R., Gottschalk G., Meyer O.
      J. Bacteriol. 193:5043-5043(2011) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 49405 / DSM 1227 / OM5Imported, ATCC 49405 / DSM 1227 / OM5 [Mississippi]Imported and OM5Imported.

    Entry informationi

    Entry nameiB6JC89_OLICO
    AccessioniPrimary (citable) accession number: B6JC89
    Entry historyi
    Integrated into UniProtKB/TrEMBL: December 16, 2008
    Last sequence update: December 16, 2008
    Last modified: October 1, 2014
    This is version 44 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3