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B6JC89 (B6JC89_OLICO) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 42. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
EC=6.5.1.1 EMBL AEI07489.1

DNA ligase EMBL ACI92305.1
Gene names
Name:lig EMBL AEI07489.1
Ordered Locus Names:OCA5_c27960 EMBL AEI07489.1, OCAR_5172 EMBL ACI92305.1
OrganismOligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) [Complete proteome] [HAMAP] EMBL ACI92305.1
Taxonomic identifier504832 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeOligotropha

Protein attributes

Sequence length563 AA.
Sequence statusComplete.
Protein existencePredicted

Sequences

Sequence LengthMass (Da)Tools
B6JC89 [UniParc].

Last modified December 16, 2008. Version 1.
Checksum: 11802521D813060D

FASTA56363,106
        10         20         30         40         50         60 
MNRFAHLLDR LAYEPGRNNK LRLITAYFRE VPDPDRGWAL AALTGALSFR HAKPGLIRDL 

        70         80         90        100        110        120 
ITARTDPALF ALSYDYVGDL SETVALMWPS VHASTNGDAK HSPTLTEIVT TLHTLGKTEI 

       130        140        150        160        170        180 
PAQLASWLDE LDETGRWALL KLVTGGLRIG VSARLAKTAA AALGDKDPHE IELIWPGLAP 

       190        200        210        220        230        240 
PYLDLFAWLE GRAEKPINRD PAPFRPVMLA HAIEDSDFAG LDPADFIAEW KWDGIRVQAV 

       250        260        270        280        290        300 
SGRKSEEHVL ARLYSRSGED ITASFPDLVP SLRLPGAIDG ELLVLREGRV QSFNVLQQRL 

       310        320        330        340        350        360 
NRKSVTPKLM KDYPIHLRAY DLLAEGEDDL RDLPFIDRRA RLERFIARLD DPRIDLSPQV 

       370        380        390        400        410        420 
VFATWDDLTA ARANPSDAGA GDDADAVEGV MLKRRDALYL PGRQRGQWWK WKHDPHVIDA 

       430        440        450        460        470        480 
VLMYAQRGHG KRSSYYSDYT FGVWTVGEGG DELVPVGKAY FGFTDEELVQ IDRFVRRNTV 

       490        500        510        520        530        540 
EKFGPVRHVV HEPNKGLVLE VAFEGLARSP RHKSGVAMRF PRISRLRWDK PPGEADRLET 

       550        560 
LKRLLKEDLA SVVAEGLLGR RAG 

« Hide

References

[1]"Genome sequence of the chemolithoautotrophic bacterium Oligotropha carboxidovorans OM5T."
Paul D., Bridges S., Burgess S.C., Dandass Y., Lawrence M.L.
J. Bacteriol. 190:5531-5532(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 49405 / DSM 1227 / OM5 [Mississippi] and OM5 EMBL ACI92305.1.
[2]"Complete Genome Sequences of the Chemolithoautotrophic Oligotropha carboxidovorans Strains OM4 and OM5."
Volland S., Rachinger M., Strittmatter A., Daniel R., Gottschalk G., Meyer O.
J. Bacteriol. 193:5043-5043(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 49405 / DSM 1227 / OM5 and OM5 EMBL AEI07489.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001196 Genomic DNA. Translation: ACI92305.1.
CP002826 Genomic DNA. Translation: AEI07489.1.
RefSeqYP_002288170.1. NC_011386.1.
YP_004633730.1. NC_015684.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING504832.OCAR_5172.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACI92305; ACI92305; OCAR_5172.
AEI07489; AEI07489; OCA5_c27960.
GeneID10847928.
6991160.
KEGGoca:OCAR_5172.
ocg:OCA5_c27960.
PATRIC22804283. VBIOliCar134280_1112.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1793.
HOGENOMHOG000036007.
KOK01971.
OMANRHKSGV.
OrthoDBEOG6Q8HXT.

Enzyme and pathway databases

BioCycOCAR504832:GJPZ-2796-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR04120. DNA_lig_bact. 1 hit.
PROSITEPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB6JC89_OLICO
AccessionPrimary (citable) accession number: B6JC89
Entry history
Integrated into UniProtKB/TrEMBL: December 16, 2008
Last sequence update: December 16, 2008
Last modified: July 9, 2014
This is version 42 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)