B6JBM5 (B6JBM5_OLICO) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Aminomethyltransferase RuleBase RU003981
EC=2.1.2.10 RuleBase RU003981

Gene names

Name:	gcvT EMBL ACI92566.1
Ordered Locus Names:	OCA5_c25490 EMBL AEI07244.1, OCAR_5434

Organism

Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) [Complete proteome] [HAMAP]

Taxonomic identifier

504832 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Bradyrhizobiaceae › Oligotropha

Protein attributes

Sequence length	382 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	The glycine cleavage system catalyzes the degradation of glycine By similarity. RuleBase RU003981
Catalytic activity	[Protein]-S(8)-aminomethyldihydrolipoyllysine + tetrahydrofolate = [protein]-dihydrolipoyllysine + 5,10-methylenetetrahydrofolate + NH3. SAAS SAAS006223 RuleBase RU003981
Subunit structure	The glycine cleavage system is composed of four proteins: P, T, L and H By similarity. RuleBase RU003981
Sequence similarities	Belongs to the GcvT family. RuleBase RU003980

Ontologies

Keywords
Molecular function	Aminotransferase SAAS SAAS006223 RuleBase RU003981 Methyltransferase EMBL AEI07244.1 Transferase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	glycine catabolic process Inferred from electronic annotation. Source: InterPro
Cellular component	cytoplasm Inferred from electronic annotation. Source: InterPro
Molecular function	aminomethyltransferase activity Inferred from electronic annotation. Source: EC transaminase activity Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B6JBM5 [UniParc]. Last modified December 16, 2008. Version 1. Checksum: 5C4B29065234351C	FASTA	382	40,397
	10 20 30 40 50 60 MSAQPGPSSL KQVPLHALHV SRGGKMVPFA GYEMPVQYAA GVLKEHLHTR ASAGLFDVSH 70 80 90 100 110 120 MGQIMLRPKS GRVEDAAAAL ERLVPQDILG IAPGRQRYAL FTNEDGGILD DLMVANFGDA 130 140 150 160 170 180 LFLVVNAACK DADEAHLRAH LSSTCEIVPL TDRALIALQG PKAVAVLEKL DPTISAMRFM 190 200 210 220 230 240 DSGPRTLLGI PCFVSRSGYT GEDGFEISVP AADAERLVTT LLADPAVLPI GLGARDSLRL 250 260 270 280 290 300 EAGLCLYGHD IDTTTTPIEG ALEWAIQKAR RKGGAREGGF PGADTILRQL AEGAPRRRVG 310 320 330 340 350 360 LKAEGRAPVR EDAPLFADAS STNRLGRVTS GGFGPSVNGP VAMGYVPTPL ASAGTALVTE 370 380 LRGSRLPMQV VKLPFVAPTY QR

References

[1]	"Genome sequence of the chemolithoautotrophic bacterium Oligotropha carboxidovorans OM5T." Paul D., Bridges S., Burgess S.C., Dandass Y., Lawrence M.L. J. Bacteriol. 190:5531-5532(2008) [PubMed: 18539730] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 49405 / DSM 1227 / OM5 [Mississippi].
[2]	"Complete genome sequences of the chemolithoautotrophic Oligotropha carboxidovorans strains OM4 and OM5." Volland S., Rachinger M., Strittmatter A., Daniel R., Gottschalk G., Meyer O. J. Bacteriol. 193:5043-5043(2011) [PubMed: 21742883] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 49405 / DSM 1227 / OM5 and OM5 EMBL AEI07244.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001196 Genomic DNA. Translation: ACI92566.1. CP002826 Genomic DNA. Translation: AEI07244.1.
RefSeq	YP_002288431.1. NC_011386.1. YP_004633485.1. NC_015684.1.
3D structure databases
ProteinModelPortal	B6JBM5.
ModBase	Search...
Protein-protein interaction databases
STRING	B6JBM5.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	10847681. 6991421.
GenomeReviews	Gene locus OCAR_5434 in contig CP001196_GR.
KEGG	oca:OCAR_5434.
PATRIC	22804787. VBIOliCar134280_1363.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG299834.
OMA	MPVQYPL.
ProtClustDB	PRK13579.
Family and domain databases
InterPro	IPR013977. GCV_T_C. IPR006222. GCV_T_N. IPR006223. GcvT. [Graphical view]
KO	K00605.
PANTHER	PTHR13847:SF5. PTHR13847:SF5. 1 hit.
Pfam	PF01571. GCV_T. 1 hit. PF08669. GCV_T_C. 1 hit. [Graphical view]
PIRSF	PIRSF006487. GcvT. 1 hit.
TIGRFAMs	TIGR00528. GcvT. 1 hit.
ProtoNet	Search...

Entry information

Entry name

B6JBM5_OLICO

Accession

Primary (citable) accession number: B6JBM5

Entry history

Integrated into UniProtKB/TrEMBL:	December 16, 2008
Last sequence update:	December 16, 2008
Last modified:	January 25, 2012
This is version 23 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)