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B6IYM6

- B6IYM6_RHOCS

UniProt

B6IYM6 - B6IYM6_RHOCS

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Protein

Ribulose bisphosphate carboxylase large chain

Gene

cbbL1

Organism
Rhodospirillum centenum (strain ATCC 51521 / SW)
Status
Unreviewed - Annotation score: 3 out of 5- Protein inferred from homologyi

Functioni

RuBisCO catalyzes two reactions: the carboxylation of D-ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site.UniRule annotation

Catalytic activityi

2 3-phospho-D-glycerate + 2 H+ = D-ribulose 1,5-bisphosphate + CO2 + H2O.UniRule annotation
3-phospho-D-glycerate + 2-phosphoglycolate = D-ribulose 1,5-bisphosphate + O2.UniRule annotation

Cofactori

Note: Binds 1 magnesium ion per subunit.UniRule annotation

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Binding sitei127 – 1271Substrate; in homodimeric partnerUniRule annotation
Binding sitei177 – 1771SubstrateUniRule annotation
Active sitei179 – 1791Proton acceptorUniRule annotation
Binding sitei181 – 1811SubstrateUniRule annotation
Metal bindingi205 – 2051Magnesium; via carbamate groupUniRule annotation
Metal bindingi207 – 2071MagnesiumUniRule annotation
Metal bindingi208 – 2081MagnesiumUniRule annotation
Active sitei297 – 2971Proton acceptorUniRule annotation
Binding sitei298 – 2981SubstrateUniRule annotation
Binding sitei330 – 3301SubstrateUniRule annotation
Sitei337 – 3371Transition state stabilizerUniRule annotation
Binding sitei382 – 3821SubstrateUniRule annotation

GO - Molecular functioni

  1. magnesium ion binding Source: UniProtKB-HAMAP
  2. monooxygenase activity Source: UniProtKB-KW
  3. ribulose-bisphosphate carboxylase activity Source: UniProtKB-HAMAP

GO - Biological processi

  1. reductive pentose-phosphate cycle Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

LyaseUniRule annotationImported, MonooxygenaseUniRule annotation, Oxidoreductase

Keywords - Biological processi

Calvin cycleUniRule annotation, Carbon dioxide fixationUniRule annotation, PhotosynthesisUniRule annotation

Keywords - Ligandi

MagnesiumUniRule annotation, Metal-bindingUniRule annotation

Enzyme and pathway databases

BioCyciRCEN414684:GHCM-4035-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Ribulose bisphosphate carboxylase large chainUniRule annotation (EC:4.1.1.39UniRule annotation)
Short name:
RuBisCO large subunitUniRule annotation
Gene namesi
Name:cbbL1Imported
Synonyms:cbbLUniRule annotation
Ordered Locus Names:RC1_4061Imported
OrganismiRhodospirillum centenum (strain ATCC 51521 / SW)Imported
Taxonomic identifieri414684 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhodospirillalesRhodospirillaceaeRhodospirillum
ProteomesiUP000001591: Chromosome

PTM / Processingi

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei205 – 2051N6-carboxylysineUniRule annotation

Interactioni

Subunit structurei

Heterohexadecamer of 8 large chains and 8 small chains.UniRule annotation

Protein-protein interaction databases

STRINGi414684.RC1_4061.

Structurei

3D structure databases

ProteinModelPortaliB6IYM6.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the RuBisCO large chain family. Type I subfamily.UniRule annotation

Phylogenomic databases

eggNOGiCOG1850.
HOGENOMiHOG000230831.
KOiK01601.
OMAiCTPLKQA.
OrthoDBiEOG6ZKXMS.

Family and domain databases

Gene3Di3.20.20.110. 1 hit.
3.30.70.150. 1 hit.
HAMAPiMF_01338. RuBisCO_L_type1.
InterProiIPR020878. RuBisCo_large_chain_AS.
IPR020888. RuBisCO_lsu.
IPR000685. RuBisCO_lsu_C.
IPR017443. RuBisCO_lsu_fd_N.
IPR017444. RuBisCO_lsu_N.
[Graphical view]
PfamiPF00016. RuBisCO_large. 1 hit.
PF02788. RuBisCO_large_N. 1 hit.
[Graphical view]
SUPFAMiSSF51649. SSF51649. 1 hit.
SSF54966. SSF54966. 1 hit.
PROSITEiPS00157. RUBISCO_LARGE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B6IYM6-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MDTRVSGDQL DAKARYKPGV LKYRQMGYWV PDYEPKDTDV LAVFRITPQD
60 70 80 90 100
GVDAEEAAAA VAGESSTATW TVVWTDRLTN CDHYRAKAYR VDPVPGSPGQ
110 120 130 140 150
YFAYIAYDLD LFEEGSIANL TASIIGNVFG FKPLKALRLE DMRIPVAYLK
160 170 180 190 200
TFQGPATGIV VERERLNVYG RPLLGATMKP KLGLSGRNYG RVVYEALKGG
210 220 230 240 250
LDFTKDDENI NSQPFMHWRD RFLYCMEGVN RAMAETGEVK GTYLNVTAAT
260 270 280 290 300
MEDMYERAEF AKELGSVIIM IDLVIGYTAI QSMAKWARKN DMILHLHRAG
310 320 330 340 350
HSTYTRQKSH GVSFRVIAKW MRMAGVDHIH AGTVVGKLEG DPNVIRGVYD
360 370 380 390 400
TCRETHVPQN LQHGIFFDQP WASLKKLMPV ASGGIHAGQM HQLLTYLGED
410 420 430 440 450
VVLQFGGGTI GHPEGIQAGA TANRVALEAM VKARNEGRDI WNEGPQILQD
460 470 480
AARWCGPLRA ALETWKDVTF DYASTDSVDF VPTPTPA
Length:487
Mass (Da):54,092
Last modified:December 16, 2008 - v1
Checksum:i5CA7C2B73054AE37
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000613 Genomic DNA. Translation: ACJ01400.1.
RefSeqiYP_002300212.1. NC_011420.2.

Genome annotation databases

EnsemblBacteriaiACJ01400; ACJ01400; RC1_4061.
GeneIDi7008825.
KEGGirce:RC1_4061.
PATRICi23323296. VBIRhoCen1465_3954.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000613 Genomic DNA. Translation: ACJ01400.1 .
RefSeqi YP_002300212.1. NC_011420.2.

3D structure databases

ProteinModelPortali B6IYM6.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 414684.RC1_4061.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACJ01400 ; ACJ01400 ; RC1_4061 .
GeneIDi 7008825.
KEGGi rce:RC1_4061.
PATRICi 23323296. VBIRhoCen1465_3954.

Phylogenomic databases

eggNOGi COG1850.
HOGENOMi HOG000230831.
KOi K01601.
OMAi CTPLKQA.
OrthoDBi EOG6ZKXMS.

Enzyme and pathway databases

BioCyci RCEN414684:GHCM-4035-MONOMER.

Family and domain databases

Gene3Di 3.20.20.110. 1 hit.
3.30.70.150. 1 hit.
HAMAPi MF_01338. RuBisCO_L_type1.
InterProi IPR020878. RuBisCo_large_chain_AS.
IPR020888. RuBisCO_lsu.
IPR000685. RuBisCO_lsu_C.
IPR017443. RuBisCO_lsu_fd_N.
IPR017444. RuBisCO_lsu_N.
[Graphical view ]
Pfami PF00016. RuBisCO_large. 1 hit.
PF02788. RuBisCO_large_N. 1 hit.
[Graphical view ]
SUPFAMi SSF51649. SSF51649. 1 hit.
SSF54966. SSF54966. 1 hit.
PROSITEi PS00157. RUBISCO_LARGE. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Genome sequence of Rhodospirillum centenum."
    Touchman J.W., Bauer C., Blankenship R.E.
    Submitted (MAR-2007) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 51521 / SWImported.

Entry informationi

Entry nameiB6IYM6_RHOCS
AccessioniPrimary (citable) accession number: B6IYM6
Entry historyi
Integrated into UniProtKB/TrEMBL: December 16, 2008
Last sequence update: December 16, 2008
Last modified: November 26, 2014
This is version 43 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Miscellaneous

The basic functional RuBisCO is composed of a large chain homodimer in a "head-to-tail" conformation. In form I RuBisCO this homodimer is arranged in a barrel-like tetramer with the small subunits forming a tetrameric "cap" on each end of the "barrel".UniRule annotation

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3