B6IRN9 (B6IRN9_RHOCS) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Elongation factor Tu HAMAP-Rule MF_00118
Short name=EF-Tu HAMAP-Rule MF_00118

Gene names

Name:	tuf HAMAP-Rule MF_00118 EMBL ACI98125.1
Ordered Locus Names:	RC1_0693 EMBL ACI98125.1, RC1_0709 EMBL ACI98140.1

Organism

Rhodospirillum centenum (strain ATCC 51521 / SW) [Complete proteome] [HAMAP] EMBL ACI98125.1

Taxonomic identifier

414684 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Rhodospirillales › Rhodospirillaceae › Rhodospirillum › Rhodospirillum centenum

Protein attributes

Sequence length	395 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis By similarity. RuleBase RU000325 HAMAP-Rule MF_00118
Subunit structure	Monomer By similarity. HAMAP-Rule MF_00118
Subcellular location	Cytoplasm By similarity HAMAP-Rule MF_00118.
Sequence similarities	Belongs to the GTP-binding elongation factor family. EF-Tu/EF-1A subfamily. RuleBase RU000325 HAMAP-Rule MF_00118

Ontologies

Keywords
Biological process	Protein biosynthesis
Cellular component	Cytoplasm HAMAP-Rule MF_00118
Ligand	GTP-binding RuleBase RU000323 HAMAP-Rule MF_00118 Nucleotide-binding
Molecular function	Elongation factor RuleBase RU000325 HAMAP-Rule MF_00118 EMBL ACI98125.1
Technical term	Complete proteome
Gene Ontology (GO)
Cellular_component	cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular_function	GTP binding Inferred from electronic annotation. Source: UniProtKB-HAMAP GTPase activity Inferred from electronic annotation. Source: InterPro translation elongation factor activity Inferred from electronic annotation. Source: UniProtKB-HAMAP
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Regions
	Nucleotide binding	19 – 26	8	GTP By similarity HAMAP-Rule MF_00118
	Nucleotide binding	81 – 85	5	GTP By similarity HAMAP-Rule MF_00118
	Nucleotide binding	136 – 139	4	GTP By similarity HAMAP-Rule MF_00118

Sequences

	Sequence		Length	Mass (Da)
	B6IRN9 [UniParc]. Last modified December 16, 2008. Version 1. Checksum: C2A70F6CBB3598CB	FASTA	395	43,160
	10 20 30 40 50 60 MAKAKFERTK PHCNVGTIGH VDHGKTSLTA AITKVLAKTG GATFTAYDQI DKAPEEKARG 70 80 90 100 110 120 ITISTAHVEY ETTNRHYAHV DCPGHADYVK NMITGAAQMD GAILVVSAAD GPMPQTREHI 130 140 150 160 170 180 LLARQVGVPA LVVFLNKMDM ADPELVELVE LEVRELLSSY GFPGDDIPVV KGSALCALED 190 200 210 220 230 240 RNPEIGEQAI LELMRHVDAY IPQPERPKDR PFLMPIEDVF SISGRGTVVT GRVERGVIKV 250 260 270 280 290 300 GEEVEIVGMK PTVKTTVTGV EMFRKLLDQG EAGDNIGALL RGTKREDVER GQVLAKPGSI 310 320 330 340 350 360 TPHTKFEAET YILTKDEGGR HTPFFTNYRP QFYFRTTDVT GMVTLPEGTE MVMPGDNVRI 370 380 390 RVELIAPIAM DEGLRFAIRE GGRTVGAGVV SKIIE

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Genome sequence of Rhodospirillum centenum." Touchman J.W., Bauer C., Blankenship R.E. Submitted (MAR-2007) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 51521 / SW.
[2]	"Metabolic flexibility revealed in the genome of the cyst-forming alpha-1 proteobacterium Rhodospirillum centenum." Lu Y.K., Marden J., Han M., Swingley W.D., Mastrian S.D., Chowdhury S.R., Hao J., Helmy T., Kim S., Kurdoglu A.A., Matthies H.J., Rollo D., Stothard P., Blankenship R.E., Bauer C.E., Touchman J.W. BMC Genomics 11:325-325(2010) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: SW EMBL ACI98125.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000613 Genomic DNA. Translation: ACI98125.1. CP000613 Genomic DNA. Translation: ACI98140.1.
RefSeq	YP_002296938.1. NC_011420.2. YP_002296953.1. NC_011420.2.
3D structure databases
ModBase	Search...
MobiDB	Search...
Protein-protein interaction databases
STRING	414684.RC1_0709.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACI98125; ACI98125; RC1_0693. ACI98140; ACI98140; RC1_0709.
GeneID	7005468. 7005484.
KEGG	rce:RC1_0693. rce:RC1_0709.
PATRIC	23316596. VBIRhoCen1465_0657.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0050.
HOGENOM	HOG000229290.
KO	K02358.
OMA	DNIEMVG.
OrthoDB	EOG6R5C6X.
Enzyme and pathway databases
BioCyc	RCEN414684:GHCM-680-MONOMER. RCEN414684:GHCM-696-MONOMER.
Family and domain databases
Gene3D	3.40.50.300. 1 hit.
HAMAP	MF_00118_B. EF_Tu_B.
InterPro	IPR000795. EF_GTP-bd_dom. IPR027417. P-loop_NTPase. IPR005225. Small_GTP-bd_dom. IPR009000. Transl_B-barrel. IPR009001. Transl_elong_EF1A/Init_IF2_C. IPR004161. Transl_elong_EFTu/EF1A_2. IPR004541. Transl_elong_EFTu/EF1A_bac/org. IPR004160. Transl_elong_EFTu/EF1A_C. [Graphical view]
Pfam	PF00009. GTP_EFTU. 1 hit. PF03144. GTP_EFTU_D2. 1 hit. PF03143. GTP_EFTU_D3. 1 hit. [Graphical view]
PRINTS	PR00315. ELONGATNFCT.
SUPFAM	SSF50447. SSF50447. 1 hit. SSF50465. SSF50465. 1 hit. SSF52540. SSF52540. 1 hit.
TIGRFAMs	TIGR00485. EF-Tu. 1 hit. TIGR00231. small_GTP. 1 hit.
PROSITE	PS00301. EFACTOR_GTP. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B6IRN9_RHOCS

Accession

Primary (citable) accession number: B6IRN9

Entry history

Integrated into UniProtKB/TrEMBL:	December 16, 2008
Last sequence update:	December 16, 2008
Last modified:	July 9, 2014
This is version 48 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)