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B6IPI3 (B6IPI3_RHOCS) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 22. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Peptide deformylase 2 HAMAP MF_00163
Short name=PDF 2 HAMAP MF_00163
EC=3.5.1.88 HAMAP MF_00163
Alternative name(s):
Polypeptide deformylase 2 HAMAP MF_00163
Gene names
Name:def EMBL ACI99685.1
Synonyms:def2 HAMAP MF_00163
Ordered Locus Names:RC1_2298
OrganismRhodospirillum centenum (strain ATCC 51521 / SW) [Complete proteome] [HAMAP] EMBL ACI99685.1
Taxonomic identifier414684 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Alphaproteobacteria › Rhodospirillales › Rhodospirillaceae › Rhodospirillum

Protein attributes

Sequence length173 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions By similarity. HAMAP MF_00163

Catalytic activity

Formyl-L-methionyl peptide + H2O = formate + methionyl peptide. HAMAP MF_00163 SAAS SAAS000181

Cofactor

Binds 1 Fe2+ ion By similarity. HAMAP MF_00163

Sequence similarities

Belongs to the polypeptide deformylase family. HAMAP MF_00163 RuleBase RU003335

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site1381 By similarity HAMAP MF_00163
Metal binding951Iron By similarity HAMAP MF_00163
Metal binding1371Iron By similarity HAMAP MF_00163
Metal binding1411Iron By similarity HAMAP MF_00163

Sequences

Sequence LengthMass (Da)Tools
B6IPI3 [UniParc].

Last modified December 16, 2008. Version 1.
Checksum: C55E65E9FE959B67

FASTA17319,219
        10         20         30         40         50         60 
MSLLNILIVP DARLRQTAEP VANVDGRVAR LMDDMLETMY KAPGIGLAAP QVGVLERVIV 

        70         80         90        100        110        120 
MDIAERKTEA PTPILMANPE IIARSDELAT AQEGCLSIPD IYADVTRPRQ VRVRYVDRDG 

       130        140        150        160        170 
EVRELDADGL TATCVQHEID HLNGVLFVDY LSALKRSMLL RRLQKMQRNK AAG

« Hide

References

[1]"Genome sequence of Rhodospirillum centenum."
Touchman J.W., Bauer C., Blankenship R.E.
Submitted (MAR-2007) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000613 Genomic DNA. Translation: ACI99685.1.
RefSeqYP_002298498.1. NC_011420.2.

3D structure databases

ModBaseSearch...

Protein-protein interaction databases

STRINGB6IPI3.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID7007066.
GenomeReviewsGene locus RC1_2298 in contig CP000613_GR.
KEGGrce:RC1_2298.
PATRIC23319788. VBIRhoCen1465_2230.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHBG665227.
OMAGVLFVDY.

Family and domain databases

HAMAPMF_00163. Pep_deformylase.
[Tree]
InterProIPR000181. Fmet_deformylase.
IPR023635. Peptide_deformylase.
[Graphical view]
Gene3DG3DSA:3.90.45.10. Fmet_deformylase. 1 hit.
KOK01462.
PANTHERPTHR10458. Fmet_deformylase. 1 hit.
PfamPF01327. Pep_deformylase. 1 hit.
[Graphical view]
PIRSFPIRSF004749. Pep_def. 1 hit.
PRINTSPR01576. PDEFORMYLASE.
SUPFAMSSF56420. Fmet_deformylase. 1 hit.
TIGRFAMsTIGR00079. Pept_deformyl. 1 hit.
ProtoNetSearch...

Entry information

Entry nameB6IPI3_RHOCS
AccessionPrimary (citable) accession number: B6IPI3
Entry history
Integrated into UniProtKB/TrEMBL: December 16, 2008
Last sequence update: December 16, 2008
Last modified: December 14, 2011
This is version 22 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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