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B6IBF4 (B6IBF4_ECOSE) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 22. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:ECSE_1904
OrganismEscherichia coli (strain SE11) [Complete proteome] [HAMAP]
Taxonomic identifier409438 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia

Protein attributes

Sequence length450 AA.
Sequence statusComplete.
Protein existencePredicted

Sequences

Sequence LengthMass (Da)Tools
B6IBF4 [UniParc].

Last modified December 16, 2008. Version 1.
Checksum: C87DDDF627A8D2A7

FASTA45050,612
        10         20         30         40         50         60 
MSQKLKVVTI GGGSSYTPEL LEGFIKRYHE LPVSELWLVD VEDGKEKLDI IFELCQRMID 

        70         80         90        100        110        120 
NAGVPMKLYK TLDRREALKD ADFVTTQLRV GQLPARELDE RIPLSHGYLG QETNGAGGLF 

       130        140        150        160        170        180 
KGLRTIPVIF DIVKDVEELC PNAWVINFTN PAGMVTEAVY RHTGFKRFIG VCNIPIGMKM 

       190        200        210        220        230        240 
FIRDVLMLKD SDDLSIDLFG LNHMVFIKDV LVNGKSRFAE LLDGVASGQL KASSVKNIFD 

       250        260        270        280        290        300 
LPFSEGLIRS LNLLPCSYLL YYFKQKEMLA IEMGEYYKGG ARAQVVQKVE KQLFELYKNP 

       310        320        330        340        350        360 
ELKVKPKELE QRGGAYYSDA ACEVINAIYN DKQAEHYVNI PHHGHIDNIP ADWAVEMTCK 

       370        380        390        400        410        420 
LGRDGATPHP RITHFDDKVM GLIHTIKGFE IAASNAALSG EFNDVLLALN LSPLVHSDRD 

       430        440        450 
AELLAREMIL AHEKWLPNFA DCIAELKKAH 

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References

[1]"Complete genome sequence and comparative analysis of the wild-type commensal Escherichia coli strain SE11 isolated from a healthy adult."
Oshima K., Toh H., Ogura Y., Sasamoto H., Morita H., Park S.-H., Ooka T., Iyoda S., Taylor T.D., Hayashi T., Itoh K., Hattori M.
DNA Res. 15:375-386(2008) [PubMed: 18931093] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AP009240 Genomic DNA. Translation: BAG77428.1.
RefSeqYP_002293179.1. NC_011415.1.

3D structure databases

ProteinModelPortalB6IBF4.
SMRB6IBF4. Positions 4-442.
ModBaseSearch...

Protein-protein interaction databases

STRINGB6IBF4.

Protein family/group databases

CAZyGH4. Glycoside Hydrolase Family 4.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaEBESCT00000108956; EBESCP00000103736; EBESCG00000106915.
GeneID7000282.
GenomeReviewsGene locus ECSE_1904 in contig AP009240_GR.
KEGGecy:ECSE_1904.
PATRIC18422310. VBIEscCol83070_2050.

Organism-specific databases

CMRSearch...

Phylogenomic databases

GeneTreeEBGT00050000010199.
HOGENOMHBG511715.
OMAAKDERIP.
ProtClustDBCLSK880178.

Family and domain databases

InterProIPR019802. GlycHydrolase_4_CS.
IPR001088. Glyco_hydro_4.
IPR022616. Glyco_hydro_4_C.
IPR015955. Lactate_DH/Glyco_Ohase_4_C.
IPR016040. NAD(P)-bd_dom.
[Graphical view]
Gene3DG3DSA:3.90.110.10. lact_mal_DH. 1 hit.
G3DSA:3.40.50.720. NAD(P)-bd. 1 hit.
KOK01222.
PfamPF02056. Glyco_hydro_4. 1 hit.
PF11975. Glyco_hydro_4C. 1 hit.
[Graphical view]
PRINTSPR00732. GLHYDRLASE4.
SUPFAMSSF56327. Lactate_DH/Glyco_hydro_4_C. 1 hit.
PROSITEPS01324. GLYCOSYL_HYDROL_F4. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB6IBF4_ECOSE
AccessionPrimary (citable) accession number: B6IBF4
Entry history
Integrated into UniProtKB/TrEMBL: December 16, 2008
Last sequence update: December 16, 2008
Last modified: December 14, 2011
This is version 22 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)