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B6I8G8 (YBJL_ECOSE) Reviewed, UniProtKB/Swiss-Prot

Last modified May 29, 2013. Version 36. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Putative transport protein YbjL
Gene names
Name:ybjL
Ordered Locus Names:ECSE_0905
OrganismEscherichia coli (strain SE11) [Complete proteome] [HAMAP]
Taxonomic identifier409438 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Escherichia ›

Protein attributes

Sequence length561 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Subcellular location

Cell membrane; Multi-pass membrane protein Potential HAMAP-Rule MF_01015.

Sequence similarities

Belongs to the AAE transporter (TC 2.A.81) family. YbjL subfamily. [View classification]

Contains 2 RCK C-terminal domains.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 561561Putative transport protein YbjL HAMAP-Rule MF_01015
PRO_1000135184

Regions

Transmembrane8 – 2821Helical; Potential
Transmembrane32 – 5221Helical; Potential
Transmembrane66 – 8621Helical; Potential
Transmembrane94 – 11421Helical; Potential
Transmembrane158 – 17821Helical; Potential
Transmembrane383 – 40321Helical; Potential
Transmembrane406 – 42621Helical; Potential
Transmembrane451 – 47121Helical; Potential
Transmembrane475 – 49521Helical; Potential
Transmembrane540 – 56021Helical; Potential
Domain200 – 28889RCK C-terminal 1
Domain292 – 37382RCK C-terminal 2

Sequences

Sequence LengthMass (Da)Tools
B6I8G8 [UniParc].

Last modified December 16, 2008. Version 1.
Checksum: 9FD6F8CA67945F85

FASTA56160,351
        10         20         30         40         50         60 
MNINVAELLN GNYILLLFVV LALGLCLGKL RLGSIQLGNS IGVLVVSLLL GQQHFSINTD 

        70         80         90        100        110        120 
ALNLGFMLFI FCVGVEAGPN FFSIFFRDGK NYLMLALVMV GSALVIALGL GKLFGWDIGL 

       130        140        150        160        170        180 
TAGMLAGSMT STPVLVGAGD TLRHSGMESR QLSLALDNLS LGYALTYLIG LVSLIVGARY 

       190        200        210        220        230        240 
LPKLQHQDLQ TSAQQIARER GLDTDANRKV YLPVIRAYRV GPELVAWTDG KNLRELGIYR 

       250        260        270        280        290        300 
QTGCYIERIR RNGILANPDG DAVLQMGDEI ALVGYPDAHA RLDPSFRNGK EVFDRDLLDM 

       310        320        330        340        350        360 
RIVTEEVVVK NHNAVGKRLA QLKLTDHGCF LNRVIRSQIE MPIDDNVVLN KGDVLQVSGD 

       370        380        390        400        410        420 
ARRVKTIADR IGFISIHSQV TDLLAFCAFF VIGLMIGMIT FQFSTFSFGM GNAAGLLFAG 

       430        440        450        460        470        480 
IMLGFMRANH PTFGYIPQGA LSMVKEFGLM VFMAGVGLSA GSGINNGLGA IGGQMLIAGL 

       490        500        510        520        530        540 
IVSLVPVVIC FLFGAYVLRM NRALLFGAMM GARTCAPAME IISDTARSNI PALGYAGTYA 

       550        560 
IANVLLTLAG TIIVMVWPGL G

« Hide

References

[1]"Complete genome sequence and comparative analysis of the wild-type commensal Escherichia coli strain SE11 isolated from a healthy adult."
Oshima K., Toh H., Ogura Y., Sasamoto H., Morita H., Park S.-H., Ooka T., Iyoda S., Taylor T.D., Hayashi T., Itoh K., Hattori M.
DNA Res. 15:375-386(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: SE11.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AP009240 Genomic DNA. Translation: BAG76429.1.
RefSeqYP_002292180.1. NC_011415.1.

3D structure databases

ProteinModelPortalB6I8G8.
SMRB6I8G8. Positions 216-287.
ModBaseSearch...

Protein-protein interaction databases

STRING409438.ECSE_0905.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAG76429; BAG76429; ECSE_0905.
GeneID6999276.
KEGGecy:ECSE_0905.
PATRIC18420262. VBIEscCol83070_1033.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG2985.
HOGENOMHOG000218047.
KOK07085.
OMACFLNRIV.
ProtClustDBPRK04972.

Enzyme and pathway databases

BioCycECOL409438:GHUU-928-MONOMER.

Family and domain databases

HAMAPMF_01015. YbjL.
InterProIPR006037. RCK_C.
IPR023017. Transp_YbjL_put.
IPR006512. YidE_YbjL.
[Graphical view]
PfamPF06826. Asp-Al_Ex. 2 hits.
PF02080. TrkA_C. 2 hits.
[Graphical view]
TIGRFAMsTIGR01625. YidE_YbjL_dupl. 2 hits.
PROSITEPS51202. RCK_C. 2 hits.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameYBJL_ECOSE
AccessionPrimary (citable) accession number: B6I8G8
Entry history
Integrated into UniProtKB/Swiss-Prot: April 14, 2009
Last sequence update: December 16, 2008
Last modified: May 29, 2013
This is version 36 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

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