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B6I6N0

- DEOB_ECOSE

UniProt

B6I6N0 - DEOB_ECOSE

Protein

Phosphopentomutase

Gene

deoB

Organism
Escherichia coli (strain SE11)
Status
Reviewed - Annotation score: 3 out of 5- Protein inferred from homologyi
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    • History
      Entry version 45 (01 Oct 2014)
      Sequence version 1 (16 Dec 2008)
      Previous versions | rss
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    Functioni

    Phosphotransfer between the C1 and C5 carbon atoms of pentose.UniRule annotation

    Catalytic activityi

    Alpha-D-ribose 1-phosphate = D-ribose 5-phosphate.UniRule annotation
    2-deoxy-alpha-D-ribose 1-phosphate = 2-deoxy-alpha-D-ribose 5-phosphate.UniRule annotation

    Cofactori

    Binds 1 or 2 manganese ions.UniRule annotation

    Pathwayi

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Metal bindingi10 – 101ManganeseUniRule annotation
    Metal bindingi311 – 3111ManganeseUniRule annotation
    Metal bindingi347 – 3471ManganeseUniRule annotation
    Metal bindingi348 – 3481ManganeseUniRule annotation
    Metal bindingi359 – 3591ManganeseUniRule annotation

    GO - Molecular functioni

    1. magnesium ion binding Source: InterPro
    2. manganese ion binding Source: UniProtKB-HAMAP
    3. phosphopentomutase activity Source: UniProtKB-HAMAP

    GO - Biological processi

    1. 5-phosphoribose 1-diphosphate biosynthetic process Source: UniProtKB-UniPathway
    2. cellular metabolic compound salvage Source: InterPro
    3. deoxyribonucleotide catabolic process Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Isomerase

    Keywords - Ligandi

    Manganese, Metal-binding

    Enzyme and pathway databases

    BioCyciECOL409438:GHUU-4761-MONOMER.
    UniPathwayiUPA00087; UER00173.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    PhosphopentomutaseUniRule annotation (EC:5.4.2.7UniRule annotation)
    Alternative name(s):
    PhosphodeoxyribomutaseUniRule annotation
    Gene namesi
    Name:deoBUniRule annotation
    Ordered Locus Names:ECSE_4658
    OrganismiEscherichia coli (strain SE11)
    Taxonomic identifieri409438 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
    ProteomesiUP000008199: Chromosome

    Subcellular locationi

    Cytoplasm UniRule annotation

    GO - Cellular componenti

    1. cytoplasm Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Cytoplasm

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 407407PhosphopentomutasePRO_1000133074Add
    BLAST

    Amino acid modifications

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Modified residuei287 – 2871N6-acetyllysineUniRule annotation

    Keywords - PTMi

    Acetylation

    Proteomic databases

    PRIDEiB6I6N0.

    Interactioni

    Protein-protein interaction databases

    STRINGi409438.ECSE_4658.

    Structurei

    3D structure databases

    ProteinModelPortaliB6I6N0.
    SMRiB6I6N0. Positions 2-407.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the phosphopentomutase family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG1015.
    HOGENOMiHOG000008159.
    KOiK01839.
    OMAiEHTREHI.
    OrthoDBiEOG6R5C7J.

    Family and domain databases

    Gene3Di3.30.70.1250. 1 hit.
    3.40.720.10. 2 hits.
    HAMAPiMF_00740. Phosphopentomut.
    InterProiIPR017849. Alkaline_Pase-like_a/b/a.
    IPR017850. Alkaline_phosphatase_core.
    IPR010045. DeoB.
    IPR006124. Metalloenzyme.
    IPR024052. Phosphopentomutase_DeoB_cap.
    [Graphical view]
    PfamiPF01676. Metalloenzyme. 1 hit.
    [Graphical view]
    PIRSFiPIRSF001491. Ppentomutase. 1 hit.
    SUPFAMiSSF143856. SSF143856. 1 hit.
    SSF53649. SSF53649. 2 hits.
    TIGRFAMsiTIGR01696. deoB. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    B6I6N0-1 [UniParc]FASTAAdd to Basket

    « Hide

    MKRAFIMVLD SFGIGATEDA ERFGDVGADT LGHIAEACAK GEADNGRKGP    50
    LNLPNLTRLG LAKAHEGSTG FIPAGMDGNA EVIGAYAWAH EMSSGKDTPS 100
    GHWEIAGVPV LFEWGYFSDH ENSFPQELLD KLVERANLPG YLGNCHSSGT 150
    VILDQLGEEH MKTGKPIFYT SADSVFQIAC HEETFGLDKL YELCEIAREE 200
    LTNGGYNIGR VIARPFIGDK AGNFQRTGNR HDLAVEPPAP TVLQKLVDEK 250
    HGQVVSVGKI ADIYANCGIT KKVKATGLDA LFDATIKEMK EAGDNTIVFT 300
    NFVDFDSSWG HRRDVAGYAA GLELFDRRLP ELMSLLRDDD ILILTADHGC 350
    DPTWTGTDHT REHIPVLVYG PKVKPGSLGH RETFADIGQT LAKYFGTSDM 400
    EYGKAMF 407
    Length:407
    Mass (Da):44,370
    Last modified:December 16, 2008 - v1
    Checksum:i516F3018DC77A077
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP009240 Genomic DNA. Translation: BAG80182.1.
    RefSeqiYP_002295933.1. NC_011415.1.

    Genome annotation databases

    EnsemblBacteriaiBAG80182; BAG80182; ECSE_4658.
    GeneIDi7003043.
    KEGGiecy:ECSE_4658.
    PATRICi18428068. VBIEscCol83070_4848.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP009240 Genomic DNA. Translation: BAG80182.1 .
    RefSeqi YP_002295933.1. NC_011415.1.

    3D structure databases

    ProteinModelPortali B6I6N0.
    SMRi B6I6N0. Positions 2-407.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 409438.ECSE_4658.

    Proteomic databases

    PRIDEi B6I6N0.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai BAG80182 ; BAG80182 ; ECSE_4658 .
    GeneIDi 7003043.
    KEGGi ecy:ECSE_4658.
    PATRICi 18428068. VBIEscCol83070_4848.

    Phylogenomic databases

    eggNOGi COG1015.
    HOGENOMi HOG000008159.
    KOi K01839.
    OMAi EHTREHI.
    OrthoDBi EOG6R5C7J.

    Enzyme and pathway databases

    UniPathwayi UPA00087 ; UER00173 .
    BioCyci ECOL409438:GHUU-4761-MONOMER.

    Family and domain databases

    Gene3Di 3.30.70.1250. 1 hit.
    3.40.720.10. 2 hits.
    HAMAPi MF_00740. Phosphopentomut.
    InterProi IPR017849. Alkaline_Pase-like_a/b/a.
    IPR017850. Alkaline_phosphatase_core.
    IPR010045. DeoB.
    IPR006124. Metalloenzyme.
    IPR024052. Phosphopentomutase_DeoB_cap.
    [Graphical view ]
    Pfami PF01676. Metalloenzyme. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF001491. Ppentomutase. 1 hit.
    SUPFAMi SSF143856. SSF143856. 1 hit.
    SSF53649. SSF53649. 2 hits.
    TIGRFAMsi TIGR01696. deoB. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Complete genome sequence and comparative analysis of the wild-type commensal Escherichia coli strain SE11 isolated from a healthy adult."
      Oshima K., Toh H., Ogura Y., Sasamoto H., Morita H., Park S.-H., Ooka T., Iyoda S., Taylor T.D., Hayashi T., Itoh K., Hattori M.
      DNA Res. 15:375-386(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: SE11.

    Entry informationi

    Entry nameiDEOB_ECOSE
    AccessioniPrimary (citable) accession number: B6I6N0
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: April 14, 2009
    Last sequence update: December 16, 2008
    Last modified: October 1, 2014
    This is version 45 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome

    Documents

    1. PATHWAY comments
      Index of metabolic and biosynthesis pathways
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3